Phydbac is a web interactive tool that display phylogenomic profiles of bacterial protein sequences. It also provides a way to identify, in a given organism, the proteins that have the most similar sequence conservation profiles to a query protein. The analysis of the annotation of those phylogenomic neighbors may help generate hypothetical functions for the query protein(s). This is the second major release of Phydbac (01/02/2004).

Home Guided tour Links&sources News IGS resources Help
 
Features:
 
Guided tour :
Interactive tutorial to understand everything you need to know about Phydbac.
 
Links&sources :
usefull links and sources used to generate the data.
 
News :
Description of the latest update of Phydbac as well as some supplementary material (animation, graphic..).
 
IGS resources :
A link to the IGS web site and to the different resources available.
 
Help :
Everything you need to know about Phydbac input sequence, file formats, options...

Restricted access
Access to potential bioterrorist organisms is now protected.
 
 
Previous release
If you want to use the old version of Phydbac
 
Francois Enault
home page
 
Welcome to Phydbac's new release

The Prediction Section is now available

New : Viral proteins phylogenetic profiling available !

New : Mimivirus Phylogenetic profiling available !

- More than 50 organisms processed and available.
- Genomic proximity and gene fusion events now computed and displayed.
- New options to go further.

An entertaining brand new guided tour to understand how Phydbac works and how to use it.

Choose a bacteria
Bacteria surrounded with ** are potential bioterrorism organisms. Please first register or login. register or to login.
 
Enter a gene name
(Examples:b0009, thrA, yaaI)
 
Access the genes by words in their annotation
(Examples:hydrolase, transporter)
 
Access a KEGG pathway
(Examples: Sterol, Energy)
 
Enter a sequence and find the most similar ones in the chosen bacteria
Paste your sequence in fasta format.

If you find results from this site helpful for your research, please cite:

Francois Enault, Karsten Suhre, Olivier Poirot, Chantal Abergel & Jean-Michel Claverie Phydbac 2 : improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis, Nucleic Acids Research, 2004 Jul 1;32(Web Server issue):W336-94.


This page is maintained by Francois ENAULT (last modification: 25 March 2004)