R. conorii - RPEs and RRs

RPE-1 RPE-2 RPE-3 RPE-4 RPE-5 RPE-6 RPE-7 RPE-8 RR-1 RR-2

RPE-1

 Total..        Size:    25-150 bp
                Number:  52
                  Within Genes:   27
                  Other Overlaps: 10
                  Intergenic:     15

 Full Length..  Size:    106-150 bp
                Number:  45
                  Within Genes:   24
                  Other Overlaps: 10
                  Intergenic:     11

 Partial..      Size:    25-40 bp
                Number:  7
                  Within Genes:   3
                  Other Overlaps: 0
                  Intergenic::    4

Repeats				Overlapping Genes
Family	Full / Partial	Size (bp)	2-D Structure	Gene	Size (bp)	Repeat Location	5'/Middle/3'	Overlap (bp)	Gene Function
RPE-1	Full	150	jpg ps
RPE-1	Full	149	jpg ps	RC0781	753	714..862	3'	40	unknown (PARTIAL) similarity to N-terminal of biotin-protein ligase {VERY_UNIQUE}
RPE-1	Full	148	jpg ps
RPE-1	Full	147	jpg ps	RC0848	1296	31..177	5'	147	ubiH; UbiH protein [EC:1.14.13.-]
RPE-1	Full	147	jpg ps	RC0706	1056	772..918	3'	147	hemC; porphobilinogen deaminase [EC:4.3.1.8]
RPE-1	Full	146	jpg ps	RC1339	696	695..840	3'	2	unknown
RPE-1	Full	146	jpg ps	RCRNA32	474	78..223	5'	146	ssrA; tmRNA precursor gene encoding two pieces of RNA molecules
RPE-1	Full	145	jpg ps	RC0674	552	551..695	3'	2	def2; polypeptide deformylase [EC:3.5.1.31]
				RC0675	228	18..162	5'	145	unknown
RPE-1	Full	144	jpg ps	RC1172	348	18..161	5'	144	unknown {DEGRADATION}
RPE-1	Full	144	jpg ps	RC1201	243	100..243	3'	144	unknown
RPE-1	Full	144	jpg ps	RC1250	246	-7..137	5'	137	unknown {DEGRADATION}
RPE-1	Full	144	jpg ps	RC0555	948	16..159	5'	144	coxB; cytochrome c oxidase polypeptide II [EC:1.9.3.1]
RPE-1	Full	144	jpg ps
RPE-1	Full	144	jpg ps	RC0659	585	31..174	5'	144	unknown
				RC0660	597	596..739	3'	2	unknown
RPE-1	Full	144	jpg ps	RC0809	738	349..492	Middle	144	unknown
RPE-1	Full	144	jpg ps	RC0015	1311	120..263	5'	144	pcnB; poly(A) polymerase [EC:2.7.7.19]
RPE-1	Full	144	jpg ps	RC0027	729	728..871	3'	2	atpB; ATP synthase A chain [EC:3.6.1.34]
RPE-1	Full	144	jpg ps	RC0067	1437	625..768	Middle	144	mesJ; cell cycle protein MesJ
RPE-1	Full	144	jpg ps	RC0071	1221	985..1128	3'	144	unknown
RPE-1	Full	144	jpg ps
RPE-1	Full	144	jpg ps
RPE-1	Full	144	jpg ps	RC0118	1395	147..290	5'	144	kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.-.-.-]
RPE-1	Full	144	jpg ps	RC0127	225	42..185	3'	144	unknown {DEGRADATION}
RPE-1	Full	144	jpg ps	RC0898	1668	6..149	5'	144	mviN; virulence factor mviN
RPE-1	Full	144	jpg ps
RPE-1	Full	144	jpg ps	RC0665	1038	784..927	3'	144	truB; tRNA pseudouridine 55 synthase {SPLIT_REF: RC0665 = RP501 + RP502}
RPE-1	Full	144	jpg ps	RC0209	282	22..165	5'	144	unknown
				RC0210	774	-138..6	5'	6	unknown
RPE-1	Full	144	jpg ps	RC0965	870	148..291	5'	144	ubiG; 3-demethylubiquinone-9 3-methyltransferase
RPE-1	Full	144	jpg ps	RC0966	1542	1006..1149	Middle	144	gltX2; glutamyl-tRNA synthetase [EC:6.1.1.17]
RPE-1	Full	143	jpg ps	RC0346	861	-99..44	5'	44	xthA1; exodeoxyribonuclease III [EC:3.1.11.2]
RPE-1	Full	143	jpg ps	RC1039	630	9..151	5'	143	unknown (PARTIAL) split gene of mannose-1-phosphate guanylyltransferase {SPLIT: RC1039 + RC1040 = pae:PA3551}
RPE-1	Full	143	jpg ps	RC0537	963	33..175	5'	143	rlpA; rare lipoprotein A precursor
RPE-1	Full	143	jpg ps
RPE-1	Full	143	jpg ps	RC0558	621	603..745	3'	19	lspA; lipoprotein signal peptidase [EC:3.4.23.36]
RPE-1	Full	142	jpg ps
RPE-1	Full	142	jpg ps	RC0892	240	-99..43	5'	43	unknown {DEGRADATION}
RPE-1	Full	142	jpg ps
RPE-1	Full	141	jpg ps	RC0344	912	898..1038	3'	15	rluC; ribosomal large subunit pseudouridine synthase C [EC:4.2.1.70]
RPE-1	Full	136	jpg ps
RPE-1	Full	135	jpg ps	RC0158	1020	10..144	5'	135	era; GTP-binding protein Era
RPE-1	Full	135	jpg ps	RC0183	1161	706..840	Middle	135	unknown {DEGRADATION}
RPE-1	Full	113	jpg ps	RC0175	255	-99..14	5'	14	secE; preprotein translocase SecE subunit
RPE-1	Full	108	jpg ps	RC1194	690	19..126	5'	108	gmk; guanylate kinase [EC:2.7.4.8]
RPE-1	Full	108	jpg ps	RC0094	1155	1130..1237	3'	26	dgtP; deoxyguanosinetriphosphate triphosphohydrolase [EC:3.1.5.1]
RPE-1	Full	106	jpg ps
RPE-1	Partial	40	jpg ps
RPE-1	Partial	32	jpg ps	RC0537	963	262..293	Middle	32	rlpA; rare lipoprotein A precursor
RPE-1	Partial	31	jpg ps	RC0976	324	148..178	3'	31	unknown {DEGRADATION}
RPE-1	Partial	30	jpg ps
RPE-1	Partial	30	jpg ps
RPE-1	Partial	29	jpg ps
RPE-1	Partial	25	jpg ps	RC0725	1839	822..846	Middle	25	similarity to aminopeptidase

RPE-2

 Total..        Size:    76-105 bp
                Number:  7
                  Within Genes:   5
                  Other Overlaps: 0
                  Intergenic:     2

 Full Length..  Size:    76-105 bp
                Number:  7
                  Within Genes:   5
                  Other Overlaps: 0
                  Intergenic:     2

Repeats				Overlapping Genes
Family	Full / Partial	Size (bp)	2-D Structure	Gene	Size (bp)	Repeat Location	5'/Middle/3'	Overlap (bp)	Gene Function
RPE-2	Full	105	jpg ps	RC0483	729	199..303	Middle	105	nuoC; NADH dehydrogenase I chain C [EC:1.6.5.3]
RPE-2	Full	105	jpg ps	RC1236	972	622..726	Middle	105	atpG; ATP synthase gamma chain [EC:3.6.1.34]
RPE-2	Full	103	jpg ps
RPE-2	Full	102	jpg ps	RC0698	1005	100..201	5'	102	unknown
RPE-2	Full	99	jpg ps	RC1022	948	370..468	Middle	99	ksgA; dimethyladenosine transferase [EC:2.1.1-]
RPE-2	Full	78	jpg ps
RPE-2	Full	76	jpg ps	RC0715	756	299..374	Middle	76	unknown

RPE-3

 Total..        Size:    28-122 bp
                Number:  12
                  Within Genes:   6
                  Other Overlaps: 2
                  Intergenic:     4

 Full Length..  Size:    116-122 bp
                Number:  4
                  Within Genes:   4
                  Other Overlaps: 0
                  Intergenic:     0

 Partial..      Size:    28-76 bp
                Number:  8
                  Within Genes:   2
                  Other Overlaps: 2
                  Intergenic::    4

Repeats				Overlapping Genes
Family	Full / Partial	Size (bp)	2-D Structure	Gene	Size (bp)	Repeat Location	5'/Middle/3'	Overlap (bp)	Gene Function
RPE-3	Full	122	jpg ps	RC0560	1503	796..917	Middle	122	murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
RPE-3	Full	116	jpg ps	RC0377	2190	526..641	Middle	116	ptrB; protease II [EC:3.4.21.83]
RPE-3	Full	116	jpg ps	RC0440	1341	1138..1253	3'	116	lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
RPE-3	Full	116	jpg ps	RC0592	1440	34..149	5'	116	envZ; osmolarity sensor protein envZ [EC:2.7.3.-]
RPE-3	Partial	76	jpg ps	RC0575	1017	991..1066	3'	27	capM2; capM protein
RPE-3	Partial	66	jpg ps
RPE-3	Partial	48	jpg ps
RPE-3	Partial	47	jpg ps	RC1195	330	326..372	3'	5	unknown
RPE-3	Partial	42	jpg ps	RC0537	963	181..222	Middle	42	rlpA; rare lipoprotein A precursor
RPE-3	Partial	42	jpg ps
RPE-3	Partial	41	jpg ps	RC1039	630	165..205	Middle	41	unknown (PARTIAL) split gene of mannose-1-phosphate guanylyltransferase {SPLIT: RC1039 + RC1040 = pae:PA3551}
RPE-3	Partial	28	jpg ps

RPE-4

 Total..        Size:    20-103 bp
                Number:  94
                  Within Genes:   13
                  Other Overlaps: 7
                  Intergenic:     74

 Full Length..  Size:    74-103 bp
                Number:  19
                  Within Genes:   2
                  Other Overlaps: 5
                  Intergenic:     12

 Partial..      Size:    20-66 bp
                Number:  75
                  Within Genes:   11
                  Other Overlaps: 2
                  Intergenic::    62

Repeats				Overlapping Genes
Family	Full / Partial	Size (bp)	2-D Structure	Gene	Size (bp)	Repeat Location	5'/Middle/3'	Overlap (bp)	Gene Function
RPE-4	Full	103	jpg ps
RPE-4	Full	102	jpg ps	RC0694	591	-96..6	5'	6	similarity to 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
RPE-4	Full	101	jpg ps
RPE-4	Full	101	jpg ps
RPE-4	Full	101	jpg ps
RPE-4	Full	100	jpg ps
RPE-4	Full	99	jpg ps
RPE-4	Full	96	jpg ps
RPE-4	Full	95	jpg ps	RC0679	1809	243..337	Middle	95	unknown
RPE-4	Full	95	jpg ps	RC0560	1503	1469..1563	3'	35	murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
RPE-4	Full	94	jpg ps	RC1266	648	631..724	3'	18	maf; Maf protein
RPE-4	Full	94	jpg ps
RPE-4	Full	94	jpg ps	RC0521	339	29..122	5'	94	unknown {DEGRADATION}
RPE-4	Full	88	jpg ps
RPE-4	Full	85	jpg ps	RC1228	660	-10..75	5'	75	ccmA; heme exporter protein A
RPE-4	Full	82	jpg ps
RPE-4	Full	77	jpg ps	RC0971	333	-71..6	5'	6	unknown {DEGRADATION}
				RC0972	489	415..491	3'	75	unknown {DEGRADATION}
RPE-4	Full	76	jpg ps
RPE-4	Full	74	jpg ps
RPE-4	Partial	66	jpg ps	RC1214	1647	119..184	5'	66	ampG3; ampG protein
RPE-4	Partial	61	jpg ps
RPE-4	Partial	61	jpg ps
RPE-4	Partial	60	jpg ps
RPE-4	Partial	59	jpg ps
RPE-4	Partial	58	jpg ps
RPE-4	Partial	53	jpg ps
RPE-4	Partial	52	jpg ps
RPE-4	Partial	52	jpg ps
RPE-4	Partial	52	jpg ps
RPE-4	Partial	49	jpg ps
RPE-4	Partial	47	jpg ps
RPE-4	Partial	42	jpg ps
RPE-4	Partial	37	jpg ps
RPE-4	Partial	37	jpg ps
RPE-4	Partial	37	jpg ps
RPE-4	Partial	37	jpg ps
RPE-4	Partial	37	jpg ps
RPE-4	Partial	37	jpg ps
RPE-4	Partial	36	jpg ps	RC0486	1236	164..199	Middle	36	unknown
RPE-4	Partial	36	jpg ps
RPE-4	Partial	36	jpg ps	RC1048	1368	674..709	Middle	36	proP4; proline/betaine transporter
RPE-4	Partial	36	jpg ps
RPE-4	Partial	35	jpg ps
RPE-4	Partial	35	jpg ps
RPE-4	Partial	34	jpg ps	RC0843	366	349..382	3'	18	unknown (PARTIAL) split gene of competence protein F {SPLIT: RC0843 + RC0844 = hin:HI0434} {DEGRADATION}
RPE-4	Partial	34	jpg ps
RPE-4	Partial	34	jpg ps
RPE-4	Partial	34	jpg ps
RPE-4	Partial	32	jpg ps	RC0283	1098	503..534	Middle	32	queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
RPE-4	Partial	32	jpg ps
RPE-4	Partial	32	jpg ps
RPE-4	Partial	31	jpg ps	RC0662	177	139..169	3'	31	unknown
RPE-4	Partial	31	jpg ps	RC1211	3546	2511..2541	Middle	31	dnaE; DNA polymerase III alpha chain [EC:2.7.7.7]
RPE-4	Partial	31	jpg ps	RC0482	1269	2..32	5'	31	nuoD; NADH dehydrogenase I chain D [EC:1.6.5.3]
RPE-4	Partial	31	jpg ps
RPE-4	Partial	31	jpg ps
RPE-4	Partial	30	jpg ps
RPE-4	Partial	30	jpg ps	RC0550	2517	1607..1636	Middle	30	unknown
RPE-4	Partial	30	jpg ps
RPE-4	Partial	30	jpg ps
RPE-4	Partial	29	jpg ps
RPE-4	Partial	29	jpg ps
RPE-4	Partial	29	jpg ps
RPE-4	Partial	29	jpg ps	RC1211	3546	2554..2582	Middle	29	dnaE; DNA polymerase III alpha chain [EC:2.7.7.7]
RPE-4	Partial	28	jpg ps
RPE-4	Partial	28	jpg ps
RPE-4	Partial	28	jpg ps	RC0355	1074	633..660	Middle	28	unknown
RPE-4	Partial	28	jpg ps
RPE-4	Partial	28	jpg ps
RPE-4	Partial	28	jpg ps
RPE-4	Partial	28	jpg ps
RPE-4	Partial	28	jpg ps
RPE-4	Partial	27	jpg ps
RPE-4	Partial	27	jpg ps
RPE-4	Partial	27	jpg ps
RPE-4	Partial	26	jpg ps
RPE-4	Partial	26	jpg ps
RPE-4	Partial	26	jpg ps
RPE-4	Partial	26	jpg ps
RPE-4	Partial	26	jpg ps	RC1196	183	59..84	5'	26	unknown {VERY_UNIQUE}
RPE-4	Partial	26	jpg ps
RPE-4	Partial	25	jpg ps
RPE-4	Partial	25	jpg ps
RPE-4	Partial	24	jpg ps	RC0346	861	840..863	3'	22	xthA1; exodeoxyribonuclease III [EC:3.1.11.2]
RPE-4	Partial	24	jpg ps
RPE-4	Partial	24	jpg ps
RPE-4	Partial	24	jpg ps
RPE-4	Partial	24	jpg ps
RPE-4	Partial	22	jpg ps
RPE-4	Partial	22	jpg ps
RPE-4	Partial	20	jpg ps
RPE-4	Partial	20	jpg ps
RPE-4	Partial	20	jpg ps
RPE-4	Partial	20	jpg ps

RPE-5

 Total..        Size:    22-130 bp
                Number:  55
                  Within Genes:   5
                  Other Overlaps: 14
                  Intergenic:     36

 Full Length..  Size:    108-130 bp
                Number:  26
                  Within Genes:   2
                  Other Overlaps: 8
                  Intergenic:     16

 Partial..      Size:    22-81 bp
                Number:  29
                  Within Genes:   3
                  Other Overlaps: 6
                  Intergenic::    20

Repeats				Overlapping Genes
Family	Full / Partial	Size (bp)	2-D Structure	Gene	Size (bp)	Repeat Location	5'/Middle/3'	Overlap (bp)	Gene Function
RPE-5	Full	130	jpg ps
RPE-5	Full	129	jpg ps
RPE-5	Full	128	jpg ps
RPE-5	Full	128	jpg ps
RPE-5	Full	126	jpg ps
RPE-5	Full	126	jpg ps
RPE-5	Full	126	jpg ps	RC0681	888	-58..68	5'	68	unknown
RPE-5	Full	126	jpg ps
RPE-5	Full	126	jpg ps
RPE-5	Full	125	jpg ps	RC1239	1380	1380..1504	3'	1	pdhD; dihydrolipoamide dehydrogenase [EC:1.8.1.4]
RPE-5	Full	125	jpg ps	RC0977	537	537..661	3'	1	grpE; grpE protein
RPE-5	Full	125	jpg ps
RPE-5	Full	124	jpg ps	RC0856	399	389..512	3'	11	unknown
RPE-5	Full	121	jpg ps	RC0340	174	45..165	3'	121	unknown
RPE-5	Full	119	jpg ps	RC0585	2508	2496..2614	3'	13	leuS; leucyl-tRNA synthetase [EC:6.1.1.4]
RPE-5	Full	118	jpg ps
RPE-5	Full	117	jpg ps
RPE-5	Full	115	jpg ps	RC1037	747	747..861	3'	1	ubiE; ubiquinone/menaquinone biosynthesis methlytransferase ubiE [EC:2.1.1.-]
RPE-5	Full	114	jpg ps	RC0437	507	442..555	3'	66	unknown
RPE-5	Full	113	jpg ps	RC0443	312	307..419	3'	6	cyaY; cyaY protein
RPE-5	Full	112	jpg ps
RPE-5	Full	112	jpg ps
RPE-5	Full	111	jpg ps	RCRNA21	458	118..228	5'	111	rnpB; RNA subunit (M1 RNA) of ribonuclease P
RPE-5	Full	109	jpg ps
RPE-5	Full	109	jpg ps
RPE-5	Full	108	jpg ps
RPE-5	Partial	81	jpg ps
RPE-5	Partial	71	jpg ps
RPE-5	Partial	70	jpg ps
RPE-5	Partial	54	jpg ps
RPE-5	Partial	48	jpg ps
RPE-5	Partial	41	jpg ps
RPE-5	Partial	41	jpg ps
RPE-5	Partial	41	jpg ps
RPE-5	Partial	40	jpg ps
RPE-5	Partial	36	jpg ps
RPE-5	Partial	36	jpg ps
RPE-5	Partial	36	jpg ps
RPE-5	Partial	35	jpg ps
RPE-5	Partial	33	jpg ps	RC1199	1089	1082..1114	3'	8	unknown
RPE-5	Partial	33	jpg ps
RPE-5	Partial	32	jpg ps
RPE-5	Partial	31	jpg ps	RC1235	1500	-2..29	5'	29	atpD; ATP synthase beta chain [EC:3.6.1.34]
RPE-5	Partial	31	jpg ps	RC0190	858	72..102	5'	31	dapB; dihydrodipicolinate reductase [EC:1.3.1.26]
RPE-5	Partial	29	jpg ps	RC1170	1308	-2..27	5'	27	proP5; proline/betaine transporter
RPE-5	Partial	28	jpg ps	RC0204	471	455..482	3'	17	nusB; N utilization substance protein B
RPE-5	Partial	27	jpg ps
RPE-5	Partial	27	jpg ps
RPE-5	Partial	27	jpg ps	RC0976	324	101..127	5'	27	unknown {DEGRADATION}
RPE-5	Partial	27	jpg ps
RPE-5	Partial	26	jpg ps	RC0635	393	382..407	3'	12	unknown
RPE-5	Partial	26	jpg ps
RPE-5	Partial	25	jpg ps	RC0976	324	195..219	3'	25	unknown {DEGRADATION}
RPE-5	Partial	24	jpg ps	RC1361	1833	1833..1856	3'	1	mutL; DNA mismatch repair protein MutL
RPE-5	Partial	22	jpg ps

RPE-6

 Total..        Size:    20-141 bp
                Number:  168
                  Within Genes:   27
                  Other Overlaps: 6
                  Intergenic:     135

 Full Length..  Size:    99-141 bp
                Number:  23
                  Within Genes:   1
                  Other Overlaps: 3
                  Intergenic:     19

 Partial..      Size:    20-93 bp
                Number:  145
                  Within Genes:   26
                  Other Overlaps: 3
                  Intergenic::    116

Repeats				Overlapping Genes
Family	Full / Partial	Size (bp)	2-D Structure	Gene	Size (bp)	Repeat Location	5'/Middle/3'	Overlap (bp)	Gene Function
RPE-6	Full	141	jpg ps
RPE-6	Full	139	jpg ps
RPE-6	Full	138	jpg ps	RC0558	621	-131..7	5'	7	lspA; lipoprotein signal peptidase [EC:3.4.23.36]
RPE-6	Full	137	jpg ps	RC0614	390	198..334	3'	137	unknown {DEGRADATION}
RPE-6	Full	137	jpg ps
RPE-6	Full	137	jpg ps
RPE-6	Full	137	jpg ps
RPE-6	Full	137	jpg ps
RPE-6	Full	136	jpg ps
RPE-6	Full	136	jpg ps
RPE-6	Full	136	jpg ps
RPE-6	Full	135	jpg ps
RPE-6	Full	135	jpg ps
RPE-6	Full	135	jpg ps	RC1022	948	-98..37	5'	37	ksgA; dimethyladenosine transferase [EC:2.1.1-]
RPE-6	Full	133	jpg ps
RPE-6	Full	133	jpg ps
RPE-6	Full	133	jpg ps	RC1195	330	-126..7	5'	7	unknown
				RC1196	183	119..251	3'	65	unknown {VERY_UNIQUE}
RPE-6	Full	132	jpg ps
RPE-6	Full	123	jpg ps
RPE-6	Full	122	jpg ps
RPE-6	Full	120	jpg ps
RPE-6	Full	103	jpg ps
RPE-6	Full	99	jpg ps
RPE-6	Partial	93	jpg ps
RPE-6	Partial	89	jpg ps
RPE-6	Partial	87	jpg ps
RPE-6	Partial	86	jpg ps
RPE-6	Partial	85	jpg ps
RPE-6	Partial	80	jpg ps
RPE-6	Partial	75	jpg ps
RPE-6	Partial	74	jpg ps
RPE-6	Partial	72	jpg ps
RPE-6	Partial	72	jpg ps
RPE-6	Partial	69	jpg ps
RPE-6	Partial	68	jpg ps
RPE-6	Partial	65	jpg ps
RPE-6	Partial	64	jpg ps
RPE-6	Partial	64	jpg ps
RPE-6	Partial	62	jpg ps	RC0809	738	709..770	3'	30	unknown
RPE-6	Partial	61	jpg ps
RPE-6	Partial	60	jpg ps
RPE-6	Partial	58	jpg ps	RC0530	336	44..101	5'	58	unknown {DEGRADATION}
RPE-6	Partial	58	jpg ps
RPE-6	Partial	56	jpg ps
RPE-6	Partial	53	jpg ps
RPE-6	Partial	52	jpg ps
RPE-6	Partial	50	jpg ps
RPE-6	Partial	49	jpg ps
RPE-6	Partial	47	jpg ps
RPE-6	Partial	46	jpg ps
RPE-6	Partial	44	jpg ps	RC1048	1368	1337..1380	3'	32	proP4; proline/betaine transporter
RPE-6	Partial	40	jpg ps
RPE-6	Partial	38	jpg ps	RC0249	2391	1452..1489	Middle	38	pbpC; bifunctional penicillin-binding protein 1C
RPE-6	Partial	37	jpg ps
RPE-6	Partial	36	jpg ps	RC1080	1989	73..108	5'	36	ccmF; cytochrome c-type biogenesis protein ccmF
RPE-6	Partial	35	jpg ps
RPE-6	Partial	35	jpg ps	RC0878	207	35..69	5'	35	unknown
RPE-6	Partial	34	jpg ps	RC1314	1575	324..357	Middle	34	hemK; possible protoporphyrinogen oxidase [EC:1.3.3.4]
RPE-6	Partial	34	jpg ps
RPE-6	Partial	34	jpg ps	RC0332	1137	137..170	5'	34	murB; UDP-N-acetylenolpyruvoylglucosamine reductase [EC:1.1.1.158]
RPE-6	Partial	34	jpg ps
RPE-6	Partial	34	jpg ps
RPE-6	Partial	34	jpg ps	RC1226	1983	1621..1654	Middle	34	nuoL1; NADH dehydrogenase I chain L [EC:1.6.5.3]
RPE-6	Partial	34	jpg ps
RPE-6	Partial	34	jpg ps
RPE-6	Partial	34	jpg ps
RPE-6	Partial	34	jpg ps
RPE-6	Partial	34	jpg ps	RC0705	1083	702..735	Middle	34	mccF2; similar to microcin C7 self-immunity protein {DEGRADATION}
RPE-6	Partial	34	jpg ps
RPE-6	Partial	34	jpg ps
RPE-6	Partial	34	jpg ps
RPE-6	Partial	33	jpg ps
RPE-6	Partial	33	jpg ps
RPE-6	Partial	33	jpg ps
RPE-6	Partial	32	jpg ps
RPE-6	Partial	32	jpg ps
RPE-6	Partial	32	jpg ps
RPE-6	Partial	32	jpg ps
RPE-6	Partial	32	jpg ps
RPE-6	Partial	32	jpg ps
RPE-6	Partial	32	jpg ps
RPE-6	Partial	32	jpg ps
RPE-6	Partial	32	jpg ps
RPE-6	Partial	32	jpg ps
RPE-6	Partial	32	jpg ps
RPE-6	Partial	32	jpg ps
RPE-6	Partial	32	jpg ps	RC0378	1518	1047..1078	Middle	32	nuoL3; NADH dehydrogenase I chain N [EC:1.6.5.3]
RPE-6	Partial	32	jpg ps
RPE-6	Partial	32	jpg ps	RC0378	1518	1105..1136	Middle	32	nuoL3; NADH dehydrogenase I chain N [EC:1.6.5.3]
RPE-6	Partial	31	jpg ps
RPE-6	Partial	31	jpg ps
RPE-6	Partial	31	jpg ps
RPE-6	Partial	31	jpg ps	RC0382	1302	1268..1298	3'	31	nuoN2; NADH dehydrogenase I chain N [EC:1.6.5.3]
RPE-6	Partial	31	jpg ps
RPE-6	Partial	31	jpg ps
RPE-6	Partial	31	jpg ps
RPE-6	Partial	31	jpg ps
RPE-6	Partial	31	jpg ps
RPE-6	Partial	31	jpg ps
RPE-6	Partial	30	jpg ps
RPE-6	Partial	30	jpg ps
RPE-6	Partial	30	jpg ps
RPE-6	Partial	30	jpg ps	RC1303	1281	-1..29	5'	29	hemA; 5-aminolevulinic acid synthase [EC:2.3.1.37]
RPE-6	Partial	30	jpg ps	RC0878	207	156..185	3'	30	unknown
RPE-6	Partial	30	jpg ps	RC0332	1137	52..81	5'	30	murB; UDP-N-acetylenolpyruvoylglucosamine reductase [EC:1.1.1.158]
RPE-6	Partial	30	jpg ps	RC0615	978	948..977	3'	30	gpsA; glycerol-3-phosphate dehydrogenase [EC:1.1.1.94]
RPE-6	Partial	30	jpg ps
RPE-6	Partial	30	jpg ps
RPE-6	Partial	30	jpg ps
RPE-6	Partial	30	jpg ps
RPE-6	Partial	30	jpg ps
RPE-6	Partial	30	jpg ps
RPE-6	Partial	30	jpg ps
RPE-6	Partial	29	jpg ps
RPE-6	Partial	29	jpg ps	RC0725	1839	536..564	Middle	29	similarity to aminopeptidase
RPE-6	Partial	29	jpg ps
RPE-6	Partial	29	jpg ps
RPE-6	Partial	29	jpg ps
RPE-6	Partial	29	jpg ps
RPE-6	Partial	29	jpg ps
RPE-6	Partial	29	jpg ps	RC0483	729	695..723	3'	29	nuoC; NADH dehydrogenase I chain C [EC:1.6.5.3]
RPE-6	Partial	29	jpg ps
RPE-6	Partial	29	jpg ps
RPE-6	Partial	29	jpg ps
RPE-6	Partial	28	jpg ps	RC0222	189	29..56	5'	28	unknown
RPE-6	Partial	28	jpg ps	RC0249	2391	1390..1417	Middle	28	pbpC; bifunctional penicillin-binding protein 1C
RPE-6	Partial	28	jpg ps
RPE-6	Partial	28	jpg ps
RPE-6	Partial	28	jpg ps
RPE-6	Partial	28	jpg ps	RC0657	1389	434..461	Middle	28	exoC; phosphomannomutase [EC:5.4.2.8]
RPE-6	Partial	28	jpg ps
RPE-6	Partial	28	jpg ps
RPE-6	Partial	28	jpg ps
RPE-6	Partial	28	jpg ps
RPE-6	Partial	28	jpg ps	RC1080	1989	640..667	Middle	28	ccmF; cytochrome c-type biogenesis protein ccmF
RPE-6	Partial	28	jpg ps
RPE-6	Partial	28	jpg ps
RPE-6	Partial	27	jpg ps
RPE-6	Partial	27	jpg ps	RC1137	264	86..112	5'	27	unknown (PARTIAL) split gene of poly-beta-hydroxybutyrate polymerase {SPLIT: RC1136 + RC1137 = RP738}
RPE-6	Partial	26	jpg ps
RPE-6	Partial	26	jpg ps	RC0628	1032	1004..1029	3'	26	tdcB; threonine dehydratase [EC:4.2.1.16]
RPE-6	Partial	26	jpg ps
RPE-6	Partial	26	jpg ps
RPE-6	Partial	26	jpg ps
RPE-6	Partial	26	jpg ps
RPE-6	Partial	25	jpg ps
RPE-6	Partial	25	jpg ps
RPE-6	Partial	25	jpg ps
RPE-6	Partial	25	jpg ps
RPE-6	Partial	25	jpg ps	RC0773	813	302..326	Middle	25	birA; biotin-protein ligase [EC:6.3.4.15]
RPE-6	Partial	25	jpg ps
RPE-6	Partial	25	jpg ps
RPE-6	Partial	25	jpg ps	RC0550	2517	2285..2309	Middle	25	unknown
RPE-6	Partial	25	jpg ps
RPE-6	Partial	25	jpg ps
RPE-6	Partial	25	jpg ps
RPE-6	Partial	25	jpg ps
RPE-6	Partial	25	jpg ps
RPE-6	Partial	25	jpg ps
RPE-6	Partial	25	jpg ps
RPE-6	Partial	24	jpg ps	RC0864	1920	1349..1372	Middle	24	uvrC; excinuclease ABC subunit C
RPE-6	Partial	24	jpg ps
RPE-6	Partial	23	jpg ps
RPE-6	Partial	22	jpg ps
RPE-6	Partial	22	jpg ps	RC1314	1575	371..392	Middle	22	hemK; possible protoporphyrinogen oxidase [EC:1.3.3.4]
RPE-6	Partial	21	jpg ps
RPE-6	Partial	20	jpg ps
RPE-6	Partial	20	jpg ps

RPE-7

 Total..        Size:    20-136 bp
                Number:  223
                  Within Genes:   27
                  Other Overlaps: 19
                  Intergenic:     177

 Full Length..  Size:    97-136 bp
                Number:  36
                  Within Genes:   1
                  Other Overlaps: 5
                  Intergenic:     30

 Partial..      Size:    20-93 bp
                Number:  187
                  Within Genes:   26
                  Other Overlaps: 14
                  Intergenic::    147

Repeats				Overlapping Genes
Family	Full / Partial	Size (bp)	2-D Structure	Gene	Size (bp)	Repeat Location	5'/Middle/3'	Overlap (bp)	Gene Function
RPE-7	Full	136	jpg ps
RPE-7	Full	136	jpg ps
RPE-7	Full	136	jpg ps
RPE-7	Full	134	jpg ps
RPE-7	Full	111	jpg ps
RPE-7	Full	103	jpg ps
RPE-7	Full	102	jpg ps
RPE-7	Full	101	jpg ps
RPE-7	Full	101	jpg ps
RPE-7	Full	101	jpg ps
RPE-7	Full	100	jpg ps
RPE-7	Full	100	jpg ps
RPE-7	Full	100	jpg ps	RC1210	306	30..129	5'	100	unknown {DEGRADATION}
RPE-7	Full	100	jpg ps
RPE-7	Full	100	jpg ps	RC0225	519	-61..39	5'	39	unknown
RPE-7	Full	100	jpg ps
RPE-7	Full	100	jpg ps
RPE-7	Full	99	jpg ps
RPE-7	Full	99	jpg ps
RPE-7	Full	99	jpg ps
RPE-7	Full	99	jpg ps
RPE-7	Full	99	jpg ps
RPE-7	Full	99	jpg ps	RC0268	357	-48..51	5'	51	unknown (PARTIAL) split gene of multidrug resistance protein (Atm1) {SPLIT: RC0268 + RC0269 + RC0270 + RC0271 = RP205}
RPE-7	Full	99	jpg ps
RPE-7	Full	99	jpg ps
RPE-7	Full	99	jpg ps
RPE-7	Full	99	jpg ps
RPE-7	Full	99	jpg ps	RC0662	177	-4..95	5'	95	unknown
RPE-7	Full	99	jpg ps
RPE-7	Full	99	jpg ps
RPE-7	Full	99	jpg ps	RC0210	774	752..850	3'	23	unknown
RPE-7	Full	99	jpg ps
RPE-7	Full	98	jpg ps	RC0424	453	-3..95	5'	95	unknown
RPE-7	Full	98	jpg ps
RPE-7	Full	97	jpg ps
RPE-7	Full	97	jpg ps
RPE-7	Partial	93	jpg ps
RPE-7	Partial	92	jpg ps
RPE-7	Partial	92	jpg ps
RPE-7	Partial	91	jpg ps
RPE-7	Partial	91	jpg ps
RPE-7	Partial	90	jpg ps	RC1237	1602	-85..5	5'	5	atpA; ATP synthase alpha chain [EC:3.6.1.34]
RPE-7	Partial	90	jpg ps
RPE-7	Partial	90	jpg ps
RPE-7	Partial	90	jpg ps
RPE-7	Partial	90	jpg ps
RPE-7	Partial	84	jpg ps
RPE-7	Partial	83	jpg ps
RPE-7	Partial	82	jpg ps
RPE-7	Partial	78	jpg ps
RPE-7	Partial	77	jpg ps
RPE-7	Partial	77	jpg ps	RC0408	567	537..613	3'	31	cox11; cytochrome c oxidase assembly protein cox11
RPE-7	Partial	76	jpg ps
RPE-7	Partial	75	jpg ps
RPE-7	Partial	74	jpg ps
RPE-7	Partial	74	jpg ps
RPE-7	Partial	74	jpg ps
RPE-7	Partial	73	jpg ps	RC1076	1359	-22..51	5'	51	unknown
RPE-7	Partial	73	jpg ps
RPE-7	Partial	68	jpg ps
RPE-7	Partial	65	jpg ps
RPE-7	Partial	64	jpg ps
RPE-7	Partial	64	jpg ps	RC0265	180	54..117	5'	64	unknown
RPE-7	Partial	60	jpg ps	RC0724	1116	15..74	5'	60	ispB; octaprenyl-diphosphate synthase [EC:2.5.1.-]
RPE-7	Partial	58	jpg ps	RC0014	954	55..112	5'	58	znuA; zinc/manganese ABC transporter substrate binding protein
RPE-7	Partial	58	jpg ps
RPE-7	Partial	58	jpg ps
RPE-7	Partial	57	jpg ps
RPE-7	Partial	57	jpg ps
RPE-7	Partial	55	jpg ps
RPE-7	Partial	54	jpg ps
RPE-7	Partial	53	jpg ps
RPE-7	Partial	52	jpg ps
RPE-7	Partial	51	jpg ps
RPE-7	Partial	50	jpg ps
RPE-7	Partial	50	jpg ps
RPE-7	Partial	50	jpg ps
RPE-7	Partial	49	jpg ps
RPE-7	Partial	48	jpg ps
RPE-7	Partial	48	jpg ps
RPE-7	Partial	48	jpg ps
RPE-7	Partial	48	jpg ps
RPE-7	Partial	47	jpg ps
RPE-7	Partial	47	jpg ps	RC0354	321	295..341	3'	27	unknown
RPE-7	Partial	47	jpg ps
RPE-7	Partial	46	jpg ps
RPE-7	Partial	46	jpg ps
RPE-7	Partial	46	jpg ps
RPE-7	Partial	46	jpg ps
RPE-7	Partial	46	jpg ps
RPE-7	Partial	46	jpg ps
RPE-7	Partial	45	jpg ps
RPE-7	Partial	45	jpg ps
RPE-7	Partial	45	jpg ps
RPE-7	Partial	45	jpg ps	RC0804	312	195..239	3'	45	unknown {DEGRADATION}
RPE-7	Partial	45	jpg ps
RPE-7	Partial	44	jpg ps
RPE-7	Partial	44	jpg ps
RPE-7	Partial	44	jpg ps
RPE-7	Partial	43	jpg ps
RPE-7	Partial	43	jpg ps
RPE-7	Partial	43	jpg ps
RPE-7	Partial	43	jpg ps
RPE-7	Partial	43	jpg ps
RPE-7	Partial	43	jpg ps
RPE-7	Partial	42	jpg ps
RPE-7	Partial	42	jpg ps	RC0686	843	26..67	5'	42	invasion protein homolog
RPE-7	Partial	42	jpg ps
RPE-7	Partial	42	jpg ps
RPE-7	Partial	42	jpg ps
RPE-7	Partial	42	jpg ps
RPE-7	Partial	42	jpg ps	RC0292	849	828..869	3'	22	lgtF; beta 1,4 glucosyltransferase
RPE-7	Partial	42	jpg ps
RPE-7	Partial	42	jpg ps
RPE-7	Partial	41	jpg ps	RC0802	306	181..221	3'	41	unknown
RPE-7	Partial	41	jpg ps
RPE-7	Partial	41	jpg ps	RC0725	1839	-36..5	5'	5	similarity to aminopeptidase
RPE-7	Partial	41	jpg ps
RPE-7	Partial	41	jpg ps
RPE-7	Partial	41	jpg ps
RPE-7	Partial	41	jpg ps	RC0485	399	-37..4	5'	4	nuoA; NADH dehydrogenase I chain A [EC:1.6.5.3]
RPE-7	Partial	41	jpg ps
RPE-7	Partial	40	jpg ps
RPE-7	Partial	40	jpg ps
RPE-7	Partial	40	jpg ps
RPE-7	Partial	40	jpg ps
RPE-7	Partial	40	jpg ps
RPE-7	Partial	40	jpg ps
RPE-7	Partial	40	jpg ps
RPE-7	Partial	40	jpg ps
RPE-7	Partial	40	jpg ps
RPE-7	Partial	40	jpg ps	RC0162	1047	399..438	Middle	40	unknown
RPE-7	Partial	40	jpg ps
RPE-7	Partial	39	jpg ps	RC0486	1236	120..158	5'	39	unknown
RPE-7	Partial	39	jpg ps
RPE-7	Partial	39	jpg ps
RPE-7	Partial	39	jpg ps
RPE-7	Partial	39	jpg ps
RPE-7	Partial	38	jpg ps
RPE-7	Partial	38	jpg ps
RPE-7	Partial	38	jpg ps	RC0686	843	107..144	5'	38	invasion protein homolog
RPE-7	Partial	38	jpg ps	RC0673	165	29..66	5'	38	unknown
RPE-7	Partial	37	jpg ps
RPE-7	Partial	37	jpg ps
RPE-7	Partial	37	jpg ps	RC1147	651	632..668	3'	20	similarity to serine esterase
RPE-7	Partial	36	jpg ps
RPE-7	Partial	36	jpg ps
RPE-7	Partial	36	jpg ps	RC0591	162	89..124	3'	36	unknown
RPE-7	Partial	36	jpg ps
RPE-7	Partial	36	jpg ps
RPE-7	Partial	35	jpg ps
RPE-7	Partial	35	jpg ps
RPE-7	Partial	35	jpg ps
RPE-7	Partial	35	jpg ps
RPE-7	Partial	35	jpg ps
RPE-7	Partial	35	jpg ps	RC0005	3102	792..826	Middle	35	unknown {SPLIT_REF: RC0005 = RP005 + RP006}
RPE-7	Partial	35	jpg ps
RPE-7	Partial	35	jpg ps	RC0504	594	24..58	5'	35	unknown
RPE-7	Partial	35	jpg ps
RPE-7	Partial	35	jpg ps	RC0723	1803	22..56	5'	35	unknown
RPE-7	Partial	35	jpg ps
RPE-7	Partial	34	jpg ps
RPE-7	Partial	34	jpg ps
RPE-7	Partial	34	jpg ps
RPE-7	Partial	34	jpg ps	RC0885	945	8..41	5'	34	unknown
RPE-7	Partial	34	jpg ps
RPE-7	Partial	34	jpg ps	RC0005	3102	745..778	Middle	34	unknown {SPLIT_REF: RC0005 = RP005 + RP006}
RPE-7	Partial	34	jpg ps	RC0504	594	-24..10	5'	10	unknown
RPE-7	Partial	34	jpg ps	RC0673	165	-25..9	5'	9	unknown
RPE-7	Partial	33	jpg ps
RPE-7	Partial	33	jpg ps
RPE-7	Partial	33	jpg ps
RPE-7	Partial	33	jpg ps	RC0005	3102	2049..2081	Middle	33	unknown {SPLIT_REF: RC0005 = RP005 + RP006}
RPE-7	Partial	33	jpg ps
RPE-7	Partial	33	jpg ps
RPE-7	Partial	33	jpg ps
RPE-7	Partial	33	jpg ps
RPE-7	Partial	33	jpg ps	RC0811	315	299..331	3'	17	unknown
RPE-7	Partial	33	jpg ps	RC1307	1089	47..79	5'	33	obg; GTP-binding protein
RPE-7	Partial	33	jpg ps	RC0014	954	22..54	5'	33	znuA; zinc/manganese ABC transporter substrate binding protein
RPE-7	Partial	32	jpg ps
RPE-7	Partial	32	jpg ps
RPE-7	Partial	32	jpg ps
RPE-7	Partial	31	jpg ps	RC0265	180	23..53	5'	31	unknown
RPE-7	Partial	30	jpg ps
RPE-7	Partial	30	jpg ps
RPE-7	Partial	30	jpg ps	RC1307	1089	-9..21	5'	21	obg; GTP-binding protein
RPE-7	Partial	30	jpg ps
RPE-7	Partial	30	jpg ps	RC0802	306	117..146	5'	30	unknown
RPE-7	Partial	29	jpg ps	RC0804	312	131..159	5'	29	unknown {DEGRADATION}
RPE-7	Partial	29	jpg ps
RPE-7	Partial	29	jpg ps
RPE-7	Partial	29	jpg ps
RPE-7	Partial	29	jpg ps
RPE-7	Partial	29	jpg ps
RPE-7	Partial	28	jpg ps	RC1214	1647	299..326	Middle	28	ampG3; ampG protein
RPE-7	Partial	28	jpg ps
RPE-7	Partial	28	jpg ps	RC0310	1410	-23..5	5'	5	ctp; tail-specific protease precursor [EC:3.4.21.-]
RPE-7	Partial	27	jpg ps
RPE-7	Partial	26	jpg ps
RPE-7	Partial	26	jpg ps
RPE-7	Partial	26	jpg ps
RPE-7	Partial	26	jpg ps
RPE-7	Partial	26	jpg ps
RPE-7	Partial	25	jpg ps
RPE-7	Partial	25	jpg ps	RC1025	210	209..233	3'	2	unknown {DEGRADATION}
RPE-7	Partial	24	jpg ps
RPE-7	Partial	24	jpg ps	RC1036	1437	386..409	Middle	24	ubiquinone biosynthesis protein {SPLIT_REF: RC1036 = RP678 + RP679}
RPE-7	Partial	24	jpg ps
RPE-7	Partial	24	jpg ps
RPE-7	Partial	22	jpg ps
RPE-7	Partial	22	jpg ps
RPE-7	Partial	22	jpg ps
RPE-7	Partial	21	jpg ps	RC1080	1989	1086..1106	Middle	21	ccmF; cytochrome c-type biogenesis protein ccmF
RPE-7	Partial	21	jpg ps
RPE-7	Partial	21	jpg ps
RPE-7	Partial	21	jpg ps
RPE-7	Partial	21	jpg ps
RPE-7	Partial	21	jpg ps
RPE-7	Partial	21	jpg ps
RPE-7	Partial	20	jpg ps	RC1214	1647	69..88	5'	20	ampG3; ampG protein
RPE-7	Partial	20	jpg ps
RPE-7	Partial	20	jpg ps

RPE-8

 Total..        Size:    30-172 bp
                Number:  31
                  Within Genes:   0
                  Other Overlaps: 8
                  Intergenic:     23

 Full Length..  Size:    122-172 bp
                Number:  15
                  Within Genes:   0
                  Other Overlaps: 6
                  Intergenic:     9

 Partial..      Size:    30-112 bp
                Number:  16
                  Within Genes:   0
                  Other Overlaps: 2
                  Intergenic::    14

Repeats				Overlapping Genes
Family	Full / Partial	Size (bp)	2-D Structure	Gene	Size (bp)	Repeat Location	5'/Middle/3'	Overlap (bp)	Gene Function
RPE-8	Full	172	jpg ps
RPE-8	Full	171	jpg ps	RC1283	351	321..491	3'	31	fdxA; ferredoxin
RPE-8	Full	168	jpg ps
RPE-8	Full	167	jpg ps
RPE-8	Full	167	jpg ps	RC0958	153	13..179	3'	141	unknown
RPE-8	Full	166	jpg ps
RPE-8	Full	166	jpg ps	RC0219	1203	-149..17	5'	17	hemN; probable oxygen-independent coproporphyrinogen III oxidase [EC:1.-.-.-]
RPE-8	Full	160	jpg ps	RC0070	156	135..294	3'	22	unknown {DEGRADATION}
RPE-8	Full	158	jpg ps
RPE-8	Full	158	jpg ps	RC0706	1056	1042..1199	3'	15	hemC; porphobilinogen deaminase [EC:4.3.1.8]
RPE-8	Full	155	jpg ps
RPE-8	Full	149	jpg ps
RPE-8	Full	144	jpg ps
RPE-8	Full	142	jpg ps	RC0191	480	471..612	3'	10	unknown
RPE-8	Full	122	jpg ps
RPE-8	Partial	112	jpg ps
RPE-8	Partial	111	jpg ps
RPE-8	Partial	90	jpg ps
RPE-8	Partial	87	jpg ps	RC1061	342	293..379	3'	50	unknown (PARTIAL) split gene of RP691 {SPLIT: RC1061 + RC1062 + RC1063 = RP691}
RPE-8	Partial	79	jpg ps
RPE-8	Partial	75	jpg ps
RPE-8	Partial	74	jpg ps
RPE-8	Partial	69	jpg ps
RPE-8	Partial	65	jpg ps	RC0281	678	659..723	3'	20	unknown {VERY_UNIQUE}
RPE-8	Partial	59	jpg ps
RPE-8	Partial	52	jpg ps
RPE-8	Partial	50	jpg ps
RPE-8	Partial	42	jpg ps
RPE-8	Partial	38	jpg ps
RPE-8	Partial	35	jpg ps
RPE-8	Partial	30	jpg ps

RR-1

 Total..        Size:    19-27 bp
                Number:  5
                  Within Genes:   1
                  Other Overlaps: 0
                  Intergenic:     4

 Full Length..  Size:    19-27 bp
                Number:  5
                  Within Genes:   1
                  Other Overlaps: 0
                  Intergenic:     4

Repeats				Overlapping Genes
Family	Full / Partial	Size (bp)	2-D Structure	Gene	Size (bp)	Repeat Location	5'/Middle/3'	Overlap (bp)	Gene Function
RR-1	Full	27	jpg ps
RR-1	Full	27	jpg ps	RC1196	183	9..35	5'	27	unknown {VERY_UNIQUE}
RR-1	Full	27	jpg ps
RR-1	Full	27	jpg ps
RR-1	Full	19	jpg ps

RR-2

 Total..        Size:    22-39 bp
                Number:  9
                  Within Genes:   0
                  Other Overlaps: 0
                  Intergenic:     9

 Full Length..  Size:    25-39 bp
                Number:  8
                  Within Genes:   0
                  Other Overlaps: 0
                  Intergenic:     8

 Partial..      Size:    22-22 bp
                Number:  1
                  Within Genes:   0
                  Other Overlaps: 0
                  Intergenic::    1

Repeats				Overlapping Genes
Family	Full / Partial	Size (bp)	2-D Structure	Gene	Size (bp)	Repeat Location	5'/Middle/3'	Overlap (bp)	Gene Function
RR-2	Full	39	jpg ps
RR-2	Full	38	jpg ps
RR-2	Full	38	jpg ps
RR-2	Full	25	jpg ps
RR-2	Full	25	jpg ps
RR-2	Full	25	jpg ps
RR-2	Full	25	jpg ps
RR-2	Full	25	jpg ps
RR-2	Partial	22	jpg ps