$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$ $ $ $ Your FUGUE job has finished successfully. $ $ A short summary is shown below and MORE DETAILED RESULT can be examined at $ $ $ $ http://raven.bioc.cam.ac.uk/~kenji/work/fugue/12084/fugue.html $ $ ------------------------------------------------------------------------- $ $ $ $ (the results will be deleted in *five* days). $ $ $ $ Information about the size of fold library and RECOMMENDED CUTOFF can be $ $ found in the description box below. $ $ $ $ Suggestions and comments to: fugue@cryst.bioc.cam.ac.uk $ $ $ $$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$ ############################################################################### # FUGUE v2.s.07 (01 Apr 2003) # # # # Search sequence(s) against fold library using environment-specific # # substitution tables and structure-dependent gap penalties. # # # # Fold library and substitution tables are based on the HOMSTRAD database. # # http://www-cryst.bioc.cam.ac.uk/~homstrad/ # # # # FUGUE server is available at: # # http://www-cryst.bioc.cam.ac.uk/~fugue/ # # http://www-cryst.bioc.cam.ac.uk/~fugue/prfsearch.html # # # # Citation: # # J. Shi, T. L. Blundell and K. Mizuguchi (2001), J Mol Biol, 310(1), 243-57 # # # # N.B. Please note that Fugue has been updated (since 2nd of May 2002) and # # consequently the recommended z-score cut-offs used are different from # # previous versions. The new recommended cut-offs are shown below. # # # # Size of fold library: 8491 # # Probe sequence ID : yecd # # Probe sequence len : 199 # # Probe divergence : 0.746 # # Recommended cutoff : ZSCORE >= 6.0 (CERTAIN 99% confidence) # # Other cutoff : ZSCORE >= 4.0 (LIKELY 95% confidence) # # Other cutoff : ZSCORE >= 3.5 (MARGINAL 90% confidence) # # Other cutoff : ZSCORE >= 2.0 (GUESS 50% confidence) # # Other cutoff : ZSCORE < 2.0 (UNCERTAIN) # # # # PLEN : Profile length # # RAWS : Raw alignment score # # RVN : (Raw score)-(Raw score for NULL model) # # ZSCORE : Z-score normalized by sequence divergence # # PVZ : P-value based on Z-score jumbling (Currently Disabled) # # ZORI : Original Z-score (before normalization) # # EVP : E-value based on profile calibration (Currently Disabled) # # EVF : E-value based on library search (Currently Disabled) # # AL : Alignment algorithm used for Zscore/Alignment calculation # # 0 -- Global, 2 -- GloLocSeq (No sequence termini gap penalty) # # 3 -- GloLocPrf (No profile termini gap penalty) # ############################################################################### #-----------------------------------------------------------------------------# # Profile PLEN RAWS RVN ZSCORE PVZ ZORI EVP EVF AL# # ****** # #-----------------------------------------------------------------------------# hs1j2ra 188 262 533 36.32 1.0E+03 39.17 1.0E+03 1.0E+03 00 hs1nf9a 207 183 474 32.07 1.0E+03 34.93 1.0E+03 1.0E+03 00 Isochorismatase 263 35 394 28.32 1.0E+03 31.21 1.0E+03 1.0E+03 00 1nbaa 253 92 439 28.07 1.0E+03 30.94 1.0E+03 1.0E+03 00 1yaca 204 81 361 26.76 1.0E+03 29.64 1.0E+03 1.0E+03 00 1im5a 179 112 373 26.67 1.0E+03 29.55 1.0E+03 1.0E+03 00 hs1iuka 136 -144 61 4.03 1.0E+03 6.77 1.0E+03 1.0E+03 00 hs1dxea 253 -272 44 3.44 1.0E+03 6.13 1.0E+03 1.0E+03 00 1a3wa 492 -120 20 3.37 1.0E+03 6.00 1.0E+03 1.0E+03 33 hs1p9oa 269 -281 75 3.27 1.0E+03 6.04 1.0E+03 1.0E+03 00 ### ALIGNMENT: MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION) ### >P1;hs1j2ra structureX:hs1j2ra -----------MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWS ADYAEALKQPVDAPSPAKVLPENWWQHPAALGTTDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGI STNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL* >P1;QUERY YECD sequence MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWS ADYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGI STNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL* ### ALIGNMENT: MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE ### SEQ: yecd PRF: hs1j2ra SEQLEN: 199 PRFLEN: 188 PRFSTRNUM: 1 ZSCORE: 36.32 >P1;hs1j2ra structureX:hs1j2ra -----------MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWS ADYAEALKQPVDAPSPAKVLPENWWQHPAALGTTDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGI STNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL* >P1;QUERY YECD sequence MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWS ADYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGI STNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL* ### CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS) ### ### IF NOT EQUIVELENT TO <> SECTION, THIS PART WILL BE DISCARDED. ### PFRMAT AL TARGET QUERY YECD AUTHOR 3359-3308-3659 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=36.32 REMARK CONFIDENCE: CERTAIN (99% confidence [ ZSCORE>=6.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: hs1j2ra METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. MODEL 1 PARENT 1j2r_A M 12 M 12 L 13 L 13 E 14 E 14 L 15 L 15 N 16 N 16 A 17 A 17 K 18 K 18 T 19 T 19 T 20 T 20 A 21 A 21 L 22 L 22 V 23 V 23 V 24 V 24 I 25 I 25 D 26 D 26 L 27 L 27 Q 28 Q 28 E 29 E 29 G 30 G 30 I 31 I 31 L 32 L 32 P 33 P 33 F 34 F 34 A 35 A 35 G 36 G 36 G 37 G 37 P 38 P 38 H 39 H 39 T 40 T 40 A 41 A 41 D 42 D 42 E 43 E 43 V 44 V 44 V 45 V 45 N 46 N 46 R 47 R 47 A 48 A 48 G 49 G 49 K 50 K 50 L 51 L 51 A 52 A 52 A 53 A 53 K 54 K 54 F 55 F 55 R 56 R 56 A 57 A 57 S 58 S 58 G 59 G 59 Q 60 Q 60 P 61 P 61 V 62 V 62 F 63 F 63 L 64 L 64 V 65 V 65 R 66 R 66 V 67 V 67 G 68 G 68 W 69 W 69 S 70 S 70 A 71 A 71 D 72 D 72 Y 73 Y 73 A 74 A 74 E 75 E 75 A 76 A 76 L 77 L 77 K 78 K 78 Q 79 Q 79 P 80 P 80 V 81 V 81 D 82 D 82 A 83 A 83 P 84 P 84 S 85 S 85 P 86 P 86 A 87 A 87 K 88 K 88 V 89 V 89 L 90 L 90 P 91 P 91 E 92 E 92 N 93 N 93 W 94 W 94 W 95 W 95 Q 96 Q 96 H 97 H 97 P 98 P 98 A 99 A 99 A 100 A 100 L 101 L 101 G 102 G 102 A 103 T 103 T 104 T 104 D 105 D 105 S 106 S 106 D 107 D 107 I 108 I 108 E 109 E 109 I 110 I 110 I 111 I 111 K 112 K 112 R 113 R 113 Q 114 Q 114 W 115 W 115 G 116 G 116 A 117 A 117 F 118 F 118 Y 119 Y 119 G 120 G 120 T 121 T 121 D 122 D 122 L 123 L 123 E 124 E 124 L 125 L 125 Q 126 Q 126 L 127 L 127 R 128 R 128 R 129 R 129 R 130 R 130 G 131 G 131 I 132 I 132 D 133 D 133 T 134 T 134 I 135 I 135 V 136 V 136 L 137 L 137 C 138 C 138 G 139 G 139 I 140 I 140 S 141 S 141 T 142 T 142 N 143 N 143 I 144 I 144 G 145 G 145 V 146 V 146 E 147 E 147 S 148 S 148 T 149 T 149 A 150 A 150 R 151 R 151 N 152 N 152 A 153 A 153 W 154 W 154 E 155 E 155 L 156 L 156 G 157 G 157 F 158 F 158 N 159 N 159 L 160 L 160 V 161 V 161 I 162 I 162 A 163 A 163 E 164 E 164 D 165 D 165 A 166 A 166 C 167 C 167 S 168 S 168 A 169 A 169 A 170 A 170 S 171 S 171 A 172 A 172 E 173 E 173 Q 174 Q 174 H 175 H 175 N 176 N 176 N 177 N 177 S 178 S 178 I 179 I 179 N 180 N 180 H 181 H 181 I 182 I 182 Y 183 Y 183 P 184 P 184 R 185 R 185 I 186 I 186 A 187 A 187 R 188 R 188 V 189 V 189 R 190 R 190 S 191 S 191 V 192 V 192 E 193 E 193 E 194 E 194 I 195 I 195 L 196 L 196 N 197 N 197 A 198 A 198 L 199 L 199 TER END ### ALIGNMENT: MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION) ### >P1;hs1nf9a structureX:hs1nf9a MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFLR-PLPESLRAGLVANAARLRRWCVEQ GVQIAYTAQPGSMTEEQRGLLKDFW-GPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMR AAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEVLE- -* >P1;QUERY YECD sequence ------------MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRAS GQPVFLVRVGWSADYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLR RRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNA L* ### ALIGNMENT: MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE ### SEQ: yecd PRF: hs1nf9a SEQLEN: 199 PRFLEN: 207 PRFSTRNUM: 1 ZSCORE: 32.07 >P1;hs1nf9a structureX:hs1nf9a MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFLR-PLPESLRAGLVANAARLRRWCVEQ GVQIAYTAQPGSMTEEQRGLLKDFW-GPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMR AAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEVLE- -* >P1;QUERY YECD sequence ------------MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRAS GQPVFLVRVGWSADYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLR RRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNA L* ### CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS) ### ### IF NOT EQUIVELENT TO <> SECTION, THIS PART WILL BE DISCARDED. ### PFRMAT AL TARGET QUERY YECD AUTHOR 3359-3308-3659 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=32.07 REMARK CONFIDENCE: CERTAIN (99% confidence [ ZSCORE>=6.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: hs1nf9a METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. MODEL 2 PARENT 1nf9_A M 1 P 13 R 2 T 14 H 3 A 15 D 4 Q 16 F 5 Q 17 V 6 L 18 F 7 P 19 S 8 A 20 G 9 N 21 V 10 L 22 I 11 A 23 M 12 R 24 L 13 W 25 E 14 S 26 L 15 L 27 N 16 E 28 A 17 P 29 K 18 R 30 T 19 R 31 T 20 A 32 A 21 V 33 L 22 L 34 V 23 L 35 V 24 V 36 I 25 H 37 D 26 D 38 L 27 M 39 Q 28 Q 40 E 29 R 41 G 30 Y 42 I 31 F 43 L 32 L 44 P 33 R 45 A 35 P 46 G 36 L 47 G 37 P 48 P 38 E 49 H 39 S 50 T 40 L 51 A 41 R 52 D 42 A 53 E 43 G 54 V 44 L 55 V 45 V 56 N 46 A 57 R 47 N 58 A 48 A 59 G 49 A 60 K 50 R 61 L 51 L 62 A 52 R 63 A 53 R 64 K 54 W 65 F 55 C 66 R 56 V 67 A 57 E 68 S 58 Q 69 G 59 G 70 Q 60 V 71 P 61 Q 72 V 62 I 73 F 63 A 74 L 64 Y 75 V 65 T 76 R 66 A 77 V 67 Q 78 G 68 P 79 W 69 G 80 S 70 S 81 A 71 M 82 D 72 T 83 Y 73 E 84 A 74 E 85 E 75 Q 86 A 76 R 87 L 77 G 88 K 78 L 89 Q 79 L 90 P 80 K 91 V 81 D 92 D 82 F 93 A 83 W 94 S 85 G 95 P 86 P 96 A 87 G 97 K 88 M 98 V 89 R 99 L 90 A 100 P 91 S 101 E 92 P 102 N 93 A 103 W 94 D 104 W 95 R 105 Q 96 E 106 H 97 V 107 P 98 V 108 A 99 E 109 A 100 E 110 L 101 L 111 G 102 A 112 A 103 P 113 T 104 G 114 D 105 P 115 S 106 D 116 D 107 D 117 I 108 W 118 E 109 L 119 I 110 L 120 I 111 T 121 K 112 K 122 R 113 W 123 Q 114 R 124 W 115 Y 125 G 116 S 126 A 117 A 127 F 118 F 128 Y 119 F 129 G 120 H 130 T 121 S 131 D 122 D 132 L 123 L 133 E 124 L 134 L 125 Q 135 Q 126 R 136 L 127 M 137 R 128 R 138 R 129 A 139 R 130 A 140 G 131 G 141 I 132 R 142 D 133 D 143 T 134 Q 144 I 135 L 145 V 136 V 146 L 137 L 147 C 138 C 148 G 139 G 149 I 140 V 150 S 141 Y 151 T 142 A 152 N 143 H 153 I 144 V 154 G 145 G 155 V 146 V 156 E 147 L 157 S 148 I 158 T 149 S 159 A 150 T 160 R 151 V 161 N 152 D 162 A 153 A 163 W 154 Y 164 E 155 S 165 L 156 N 166 G 157 D 167 F 158 I 168 N 159 Q 169 L 160 P 170 V 161 F 171 I 162 L 172 A 163 V 173 E 164 A 174 D 165 D 175 A 166 A 176 C 167 I 177 S 168 A 178 A 169 D 179 A 170 F 180 S 171 S 181 A 172 E 182 E 173 A 183 Q 174 H 184 H 175 H 185 N 176 R 186 N 177 M 187 S 178 A 188 I 179 L 189 N 180 E 190 H 181 Y 191 I 182 A 192 Y 183 A 193 P 184 S 194 R 185 R 195 I 186 C 196 A 187 A 197 R 188 M 198 V 189 V 199 R 190 V 200 S 191 T 201 V 192 T 202 E 193 D 203 E 194 E 204 I 195 V 205 L 196 L 206 N 197 E 207 TER END ### ALIGNMENT: MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION) ### >P1;1nbaa structureX:1nbaa TFNDIEARLAAVLEEAFEAGTSIYNERGFKRRIGYG-NRPAVIHIDLANAWTQPGHPFSCPGMETIIPNV QRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRI-APADGEVVIEK -NRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYD IDNKFGDVESTDSVVQYLDALPQFEDTVP* >P1;QUERY YECD sequence --------------------MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAGGP--HTADEVVNRA GKLAAKFRASGQPVFLVRVGWSADYAEAL-----KQPVDAPSPAKVLPENWWQHPAALGA--TDSDIEII KRQWGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINH IYPRIARVRSVEEILNAL-----------* ### ALIGNMENT: MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE ### SEQ: yecd PRF: Isochorismatase SEQLEN: 199 PRFLEN: 263 PRFSTRNUM: 2 ZSCORE: 28.32 >P1;1nbaa structureX:1nbaa TFNDIEARLAAVLEEAFEAGTSIYNERGFKRRIGYG-NRPAVIHIDLANAWTQPGHPFSCPGMETIIPNV QRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRI-APADGEVVIEK -NRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYD IDNKFGDVESTDSVVQYLDALPQFEDTVP------------------------* >P1;1yaca structureX:1yaca ----------------------------TKPYVRLDKNDAAVLLVDHQAGLLS---LVRDIEPDKFKNNV LALGDLAKYFNLPTILTTSAET--------------------------GPNGPLVPELKAQFPDAPYIAR PGNINAWDNEDFVKAVKATGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDR MSQAGAQLMTWFGVACELHR--DWRNDIAGLATLFSNHIPDYRNLMTSYDTLT* >P1;QUERY YECD sequence --------------------MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAGGP--HTADEVVNRA GKLAAKFRASGQPVFLVRVGWSADYAEAL-----KQPVDAPSPAKVLPENWWQHPAALGA--TDSDIEII KRQWGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINH IYPRIARVRSVEEILNAL-----------------------------------* ### CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS) ### ### IF NOT EQUIVELENT TO <> SECTION, THIS PART WILL BE DISCARDED. ### PFRMAT AL TARGET QUERY YECD AUTHOR 3359-3308-3659 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=28.32 REMARK CONFIDENCE: CERTAIN (99% confidence [ ZSCORE>=6.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: Isochorismatase METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. MODEL 3 PARENT 1nba_A M 1 T 27 R 2 S 28 H 3 I 29 D 4 Y 30 F 5 N 31 V 6 E 32 F 7 R 33 S 8 G 34 G 9 F 35 V 10 K 36 I 11 R 37 M 12 R 38 L 13 I 39 E 14 G 40 L 15 Y 41 N 16 G 42 K 18 N 43 T 19 R 44 T 20 P 45 A 21 A 46 L 22 V 47 V 23 I 48 V 24 H 49 I 25 I 50 D 26 D 51 L 27 L 52 Q 28 A 53 E 29 N 54 G 30 A 55 I 31 W 56 L 32 T 57 P 33 Q 58 F 34 P 59 A 35 G 60 G 36 H 61 G 37 P 62 P 38 F 63 H 39 P 66 T 40 G 67 A 41 M 68 D 42 E 69 E 43 T 70 V 44 I 71 V 45 I 72 N 46 P 73 R 47 N 74 A 48 V 75 G 49 Q 76 K 50 R 77 L 51 I 78 A 52 N 79 A 53 E 80 K 54 A 81 F 55 A 82 R 56 R 83 A 57 A 84 S 58 K 85 G 59 G 86 Q 60 V 87 P 61 P 88 V 62 V 89 F 63 F 90 L 64 Y 91 V 65 T 92 R 66 T 93 V 67 N 94 G 68 V 95 W 69 Y 96 S 70 R 97 A 71 N 98 D 72 R 99 Y 73 D 100 A 74 A 101 E 75 S 102 A 76 S 103 L 77 G 104 K 78 L 110 Q 79 W 111 P 80 Y 112 V 81 S 113 D 82 K 114 A 83 I 115 P 84 P 116 S 85 T 117 P 86 E 118 A 87 T 119 K 88 L 120 V 89 P 121 L 90 A 122 P 91 D 123 E 92 S 124 N 93 Y 125 W 94 W 126 W 95 A 127 Q 96 Q 128 H 97 I 129 P 98 D 130 A 99 D 131 A 100 R 132 L 101 I 133 A 103 A 134 T 104 D 137 D 105 G 138 S 106 E 139 D 107 V 140 I 108 V 141 E 109 I 142 I 110 E 143 I 111 K 144 R 113 N 145 Q 114 R 146 W 115 A 147 G 116 S 148 A 117 A 149 F 118 F 150 Y 119 P 151 G 120 G 152 T 121 T 153 D 122 N 154 L 123 L 155 E 124 E 156 L 125 L 157 Q 126 F 158 L 127 L 159 R 128 T 160 R 129 S 161 R 130 N 162 G 131 R 163 I 132 I 164 D 133 D 165 T 134 T 166 I 135 L 167 V 136 I 168 L 137 V 169 C 138 T 170 G 139 G 171 I 140 A 172 S 141 T 173 T 142 A 174 N 143 A 175 I 144 G 176 G 145 C 177 V 146 V 178 E 147 R 179 S 148 H 180 T 149 T 181 A 150 V 182 R 151 E 183 N 152 D 184 A 153 A 185 W 154 I 186 E 155 A 187 L 156 K 188 G 157 G 189 F 158 F 190 N 159 R 191 L 160 P 192 V 161 I 193 I 162 I 194 A 163 P 195 E 164 R 196 D 165 E 197 A 166 T 198 C 167 I 199 S 168 G 200 A 169 D 201 A 170 R 202 S 171 V 203 A 172 P 204 E 173 G 205 Q 174 V 206 H 175 V 207 N 176 Q 208 N 177 W 209 S 178 N 210 I 179 L 211 N 180 Y 212 H 181 D 213 I 182 I 214 Y 183 D 215 P 184 N 216 R 185 K 217 I 186 F 218 A 187 G 219 R 188 D 220 V 189 V 221 R 190 E 222 S 191 S 223 V 192 T 224 E 193 D 225 E 194 S 226 I 195 V 227 L 196 V 228 N 197 Q 229 A 198 Y 230 L 199 L 231 TER END ### ALIGNMENT: MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION) ### >P1;1nbaa structureX:1nbaa TFNDIEARLAAVLEEAFEAGTSIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQ RINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRIAPADGEVVIEKNR ASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDN KFGDVESTDSVVQYLDALPQFEDTVPKTLSDPQPEVEAPADPV* >P1;QUERY YECD sequence -------------------MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAGGP--HTADEVVNRAG KLAAKFRASGQPVFLVRVGWSADYAEAL-----KQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQ WGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYP RIARVRSVEEILNAL----------------------------* ### ALIGNMENT: MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE ### SEQ: yecd PRF: 1nbaa SEQLEN: 199 PRFLEN: 253 PRFSTRNUM: 1 ZSCORE: 28.07 >P1;1nbaa structureX:1nbaa TFNDIEARLAAVLEEAFEAGTSIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQ RINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRIAPADGEVVIEKNR ASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDN KFGDVESTDSVVQYLDALPQFEDTVPKTLSDPQPEVEAPADPV* >P1;QUERY YECD sequence -------------------MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAGGP--HTADEVVNRAG KLAAKFRASGQPVFLVRVGWSADYAEAL-----KQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQ WGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYP RIARVRSVEEILNAL----------------------------* ### CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS) ### ### IF NOT EQUIVELENT TO <> SECTION, THIS PART WILL BE DISCARDED. ### PFRMAT AL TARGET QUERY YECD AUTHOR 3359-3308-3659 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=28.07 REMARK CONFIDENCE: CERTAIN (99% confidence [ ZSCORE>=6.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: 1nbaa METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. MODEL 4 PARENT 1nba_A M 1 G 26 R 2 T 27 H 3 S 28 D 4 I 29 F 5 Y 30 V 6 N 31 F 7 E 32 S 8 R 33 G 9 G 34 V 10 F 35 I 11 K 36 M 12 R 37 L 13 R 38 E 14 I 39 L 15 G 40 N 16 Y 41 A 17 G 42 K 18 N 43 T 19 R 44 T 20 P 45 A 21 A 46 L 22 V 47 V 23 I 48 V 24 H 49 I 25 I 50 D 26 D 51 L 27 L 52 Q 28 A 53 E 29 N 54 G 30 A 55 I 31 W 56 L 32 T 57 P 33 Q 58 F 34 P 59 A 35 G 60 G 36 H 61 G 37 P 62 P 38 F 63 H 39 P 66 T 40 G 67 A 41 M 68 D 42 E 69 E 43 T 70 V 44 I 71 V 45 I 72 N 46 P 73 R 47 N 74 A 48 V 75 G 49 Q 76 K 50 R 77 L 51 I 78 A 52 N 79 A 53 E 80 K 54 A 81 F 55 A 82 R 56 R 83 A 57 A 84 S 58 K 85 G 59 G 86 Q 60 V 87 P 61 P 88 V 62 V 89 F 63 F 90 L 64 Y 91 V 65 T 92 R 66 T 93 V 67 N 94 G 68 V 95 W 69 Y 96 S 70 R 97 A 71 N 98 D 72 R 99 Y 73 D 100 A 74 A 101 E 75 S 102 A 76 S 103 L 77 G 104 K 78 L 110 Q 79 W 111 P 80 Y 112 V 81 S 113 D 82 K 114 A 83 I 115 P 84 P 116 S 85 T 117 P 86 E 118 A 87 T 119 K 88 L 120 V 89 P 121 L 90 A 122 P 91 D 123 E 92 S 124 N 93 Y 125 W 94 W 126 W 95 A 127 Q 96 Q 128 H 97 I 129 P 98 D 130 A 99 D 131 A 100 R 132 L 101 I 133 G 102 A 134 A 103 P 135 T 104 A 136 D 105 D 137 S 106 G 138 D 107 E 139 I 108 V 140 E 109 V 141 I 110 I 142 I 111 E 143 K 112 K 144 R 113 N 145 Q 114 R 146 W 115 A 147 G 116 S 148 A 117 A 149 F 118 F 150 Y 119 P 151 G 120 G 152 T 121 T 153 D 122 N 154 L 123 L 155 E 124 E 156 L 125 L 157 Q 126 F 158 L 127 L 159 R 128 T 160 R 129 S 161 R 130 N 162 G 131 R 163 I 132 I 164 D 133 D 165 T 134 T 166 I 135 L 167 V 136 I 168 L 137 V 169 C 138 T 170 G 139 G 171 I 140 A 172 S 141 T 173 T 142 A 174 N 143 A 175 I 144 G 176 G 145 C 177 V 146 V 178 E 147 R 179 S 148 H 180 T 149 T 181 A 150 V 182 R 151 E 183 N 152 D 184 A 153 A 185 W 154 I 186 E 155 A 187 L 156 K 188 G 157 G 189 F 158 F 190 N 159 R 191 L 160 P 192 V 161 I 193 I 162 I 194 A 163 P 195 E 164 R 196 D 165 E 197 A 166 T 198 C 167 I 199 S 168 G 200 A 169 D 201 A 170 R 202 S 171 V 203 A 172 P 204 E 173 G 205 Q 174 V 206 H 175 V 207 N 176 Q 208 N 177 W 209 S 178 N 210 I 179 L 211 N 180 Y 212 H 181 D 213 I 182 I 214 Y 183 D 215 P 184 N 216 R 185 K 217 I 186 F 218 A 187 G 219 R 188 D 220 V 189 V 221 R 190 E 222 S 191 S 223 V 192 T 224 E 193 D 225 E 194 S 226 I 195 V 227 L 196 V 228 N 197 Q 229 A 198 Y 230 L 199 L 231 TER END ### ALIGNMENT: MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION) ### >P1;1yaca structureX:1yaca --------TKPYVRLDKNDAAVLLVDHQAGLLSLV-RDIEPDKFKNNVLALGDLAKYFNLPTILTTSAET GPNGPLVPELKAQFPD-------------------APYIARPGNINAWDNEDFVKAVKATGKKQLIIAGV VTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGAQLMTWFGVACELHRDWRNDIAGL ATLFSNHIPDYRNLMTSYDTLT* >P1;QUERY YECD sequence MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWS ADYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGI STNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL----------- ----------------------* ### ALIGNMENT: MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE ### SEQ: yecd PRF: 1yaca SEQLEN: 199 PRFLEN: 204 PRFSTRNUM: 1 ZSCORE: 26.76 >P1;1yaca structureX:1yaca --------TKPYVRLDKNDAAVLLVDHQAGLLSLV-RDIEPDKFKNNVLALGDLAKYFNLPTILTTSAET GPNGPLVPELKAQFPD-------------------APYIARPGNINAWDNEDFVKAVKATGKKQLIIAGV VTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGAQLMTWFGVACELHRDWRNDIAGL ATLFSNHIPDYRNLMTSYDTLT* >P1;QUERY YECD sequence MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWS ADYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGI STNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL----------- ----------------------* ### CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS) ### ### IF NOT EQUIVELENT TO <> SECTION, THIS PART WILL BE DISCARDED. ### PFRMAT AL TARGET QUERY YECD AUTHOR 3359-3308-3659 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=26.76 REMARK CONFIDENCE: CERTAIN (99% confidence [ ZSCORE>=6.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: 1yaca METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. MODEL 5 PARENT 1yac_A G 9 T 2 V 10 K 3 I 11 P 4 M 12 Y 5 L 13 V 6 E 14 R 7 L 15 L 8 N 16 D 9 A 17 K 10 K 18 N 11 T 19 D 12 T 20 A 13 A 21 A 14 L 22 V 15 V 23 L 16 V 24 L 17 I 25 V 18 D 26 D 19 L 27 H 20 Q 28 Q 21 E 29 A 22 G 30 G 23 I 31 L 24 L 32 L 25 P 33 S 26 F 34 L 27 A 35 V 28 G 37 R 29 P 38 D 30 H 39 I 31 T 40 E 32 A 41 P 33 D 42 D 34 E 43 K 35 V 44 F 36 V 45 K 37 N 46 N 38 R 47 N 39 A 48 V 40 G 49 L 41 K 50 A 42 L 51 L 43 A 52 G 44 A 53 D 45 K 54 L 46 F 55 A 47 R 56 K 48 A 57 Y 49 S 58 F 50 G 59 N 51 Q 60 L 52 P 61 P 53 V 62 T 54 F 63 I 55 L 64 L 56 V 65 T 57 R 66 T 58 V 67 S 59 G 68 A 60 W 69 E 61 S 70 T 62 A 71 G 63 D 72 P 64 Y 73 N 65 A 74 G 66 E 75 P 67 A 76 L 68 L 77 V 69 K 78 P 70 Q 79 E 71 P 80 L 72 V 81 K 73 D 82 A 74 A 83 Q 75 P 84 F 76 S 85 P 77 P 86 D 78 S 106 A 79 D 107 P 80 I 108 Y 81 E 109 I 82 I 110 A 83 I 111 R 84 K 112 P 85 R 113 G 86 Q 114 N 87 W 115 I 88 G 116 N 89 A 117 A 90 F 118 W 91 Y 119 D 92 G 120 N 93 T 121 E 94 D 122 D 95 L 123 F 96 E 124 V 97 L 125 K 98 Q 126 A 99 L 127 V 100 R 128 K 101 R 129 A 102 R 130 T 103 G 131 G 104 I 132 K 105 D 133 K 106 T 134 Q 107 I 135 L 108 V 136 I 109 L 137 I 110 C 138 A 111 G 139 G 112 I 140 V 113 S 141 V 114 T 142 T 115 N 143 E 116 I 144 V 117 G 145 C 118 V 146 V 119 E 147 A 120 S 148 F 121 T 149 P 122 A 150 A 123 R 151 L 124 N 152 S 125 A 153 A 126 W 154 I 127 E 155 E 128 L 156 E 129 G 157 G 130 F 158 F 131 N 159 D 132 L 160 V 133 V 161 F 134 I 162 V 135 A 163 V 136 E 164 T 137 D 165 D 138 A 166 A 139 C 167 S 140 S 168 G 141 A 169 T 142 A 170 F 143 S 171 N 144 A 172 E 145 E 173 I 146 Q 174 T 147 H 175 R 148 N 176 H 149 N 177 S 150 S 178 A 151 I 179 W 152 N 180 D 153 H 181 R 154 I 182 M 155 Y 183 S 156 P 184 Q 157 R 185 A 158 I 186 G 159 A 187 A 160 R 188 Q 161 V 189 L 162 R 190 M 163 S 191 T 164 V 192 W 165 E 193 F 166 E 194 G 167 I 195 V 168 L 196 A 169 N 197 C 170 A 198 E 171 L 199 L 172 TER END ### ALIGNMENT: MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION) ### >P1;1im5a structureX:1im5a -----------------PEEALIVVDMQRDFMPGGALPVPEGDKIIPKVNEYIRKFKEKGALIVATRDWH PENHISFRERGGPWPRHCVQNTPGAEFVVDLPEDAVIISKATEPDKEAYSGFEGTDLAKILRGNGVKRVY ICGVATEYCVRATALDALKHGFEVYLLRDAVKGIKPEDEERALEEMKSRGIKIVQF-------* >P1;QUERY YECD sequence MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAG-GPHTADEVVNRAGKLAAKFRASGQPVFLVRVGW SADYAEALKQPVDAPS---PAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIV LCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL* ### ALIGNMENT: MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE ### SEQ: yecd PRF: 1im5a SEQLEN: 199 PRFLEN: 179 PRFSTRNUM: 1 ZSCORE: 26.67 >P1;1im5a structureX:1im5a -----------------PEEALIVVDMQRDFMPGGALPVPEGDKIIPKVNEYIRKFKEKGALIVATRDWH PENHISFRERGGPWPRHCVQNTPGAEFVVDLPEDAVIISKATEPDKEAYSGFEGTDLAKILRGNGVKRVY ICGVATEYCVRATALDALKHGFEVYLLRDAVKGIKPEDEERALEEMKSRGIKIVQF-------* >P1;QUERY YECD sequence MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAG-GPHTADEVVNRAGKLAAKFRASGQPVFLVRVGW SADYAEALKQPVDAPS---PAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIV LCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL* ### CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS) ### ### IF NOT EQUIVELENT TO <> SECTION, THIS PART WILL BE DISCARDED. ### PFRMAT AL TARGET QUERY YECD AUTHOR 3359-3308-3659 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=26.67 REMARK CONFIDENCE: CERTAIN (99% confidence [ ZSCORE>=6.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: 1im5a METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. MODEL 6 PARENT 1im5_A K 18 P 2 T 19 E 3 T 20 E 4 A 21 A 5 L 22 L 6 V 23 I 7 V 24 V 8 I 25 V 9 D 26 D 10 L 27 M 11 Q 28 Q 12 E 29 R 13 G 30 D 14 I 31 F 15 L 32 M 16 P 33 P 17 F 34 G 18 A 35 G 19 G 36 A 20 G 37 P 22 P 38 V 23 H 39 P 24 T 40 E 25 A 41 G 26 D 42 D 27 E 43 K 28 V 44 I 29 V 45 I 30 N 46 P 31 R 47 K 32 A 48 V 33 G 49 N 34 K 50 E 35 L 51 Y 36 A 52 I 37 A 53 R 38 K 54 K 39 F 55 F 40 R 56 K 41 A 57 E 42 S 58 K 43 G 59 G 44 Q 60 A 45 P 61 L 46 V 62 I 47 F 63 V 48 L 64 A 49 V 65 T 50 R 66 R 51 V 67 D 52 G 68 W 53 W 69 H 54 S 70 P 55 A 71 E 56 D 72 N 57 Y 73 H 58 A 74 I 59 E 75 S 60 A 76 F 61 L 77 R 62 K 78 E 63 Q 79 R 64 P 80 G 65 V 81 G 66 D 82 P 67 A 83 W 68 P 84 P 69 S 85 R 70 P 86 Q 74 A 87 N 75 K 88 T 76 V 89 P 77 L 90 G 78 P 91 A 79 E 92 E 80 N 93 F 81 W 94 V 82 W 95 V 83 Q 96 D 84 H 97 L 85 P 98 P 86 A 99 E 87 A 100 D 88 L 101 A 89 G 102 V 90 A 103 I 91 T 104 I 92 D 105 S 93 S 106 K 94 D 107 A 95 I 108 T 96 E 109 E 97 I 110 P 98 I 111 D 99 K 112 K 100 R 113 E 101 Q 114 A 102 W 115 Y 103 G 116 S 104 A 117 G 105 F 118 F 106 Y 119 E 107 G 120 G 108 T 121 T 109 D 122 D 110 L 123 L 111 E 124 A 112 L 125 K 113 Q 126 I 114 L 127 L 115 R 128 R 116 R 129 G 117 R 130 N 118 G 131 G 119 I 132 V 120 D 133 K 121 T 134 R 122 I 135 V 123 V 136 Y 124 L 137 I 125 C 138 C 126 G 139 G 127 I 140 V 128 S 141 A 129 T 142 T 130 N 143 E 131 I 144 Y 132 G 145 C 133 V 146 V 134 E 147 R 135 S 148 A 136 T 149 T 137 A 150 A 138 R 151 L 139 N 152 D 140 A 153 A 141 W 154 L 142 E 155 K 143 L 156 H 144 G 157 G 145 F 158 F 146 N 159 E 147 L 160 V 148 V 161 Y 149 I 162 L 150 A 163 L 151 E 164 R 152 D 165 D 153 A 166 A 154 C 167 V 155 S 168 K 156 A 169 G 157 A 170 I 158 S 171 K 159 A 172 P 160 E 173 E 161 Q 174 D 162 H 175 E 163 N 176 E 164 N 177 R 165 S 178 A 166 I 179 L 167 N 180 E 168 H 181 E 169 I 182 M 170 Y 183 K 171 P 184 S 172 R 185 R 173 I 186 G 174 A 187 I 175 R 188 K 176 V 189 I 177 R 190 V 178 S 191 Q 179 V 192 F 180 TER END ### ALIGNMENT: MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION) ### >P1;hs1iuka structureX:hs1iuka ------MNDQELRAYLSQAKTIAVLGAHK-------------DPSRPAHYVPRYLREQGYRVLPVNPRFQ GEELF------------------GEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLALRPGLVWLQSG IRHPEFEKALKE------------------------AGIPVVADRCLMVEHKRLFRG--* >P1;QUERY YECD sequence MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWS ADYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGI STNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL* ### ALIGNMENT: MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE ### SEQ: yecd PRF: hs1iuka SEQLEN: 199 PRFLEN: 136 PRFSTRNUM: 1 ZSCORE: 4.03 >P1;hs1iuka structureX:hs1iuka ------MNDQELRAYLSQAKTIAVLGAHK-------------DPSRPAHYVPRYLREQGYRVLPVNPRFQ GEELF------------------GEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLALRPGLVWLQSG IRHPEFEKALKE------------------------AGIPVVADRCLMVEHKRLFRG--* >P1;QUERY YECD sequence MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWS ADYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGI STNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL* ### CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS) ### ### IF NOT EQUIVELENT TO <> SECTION, THIS PART WILL BE DISCARDED. ### PFRMAT AL TARGET QUERY YECD AUTHOR 3359-3308-3659 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=4.03 REMARK CONFIDENCE: LIKELY (95% confidence [ ZSCORE>=4.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: hs1iuka METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. MODEL 7 PARENT 1iuk_A F 7 M 1 S 8 N 2 G 9 D 3 V 10 Q 4 I 11 E 5 M 12 L 6 L 13 R 7 E 14 A 8 L 15 Y 9 N 16 L 10 A 17 S 11 K 18 Q 12 T 19 A 13 T 20 K 14 A 21 T 15 L 22 I 16 V 23 A 17 V 24 V 18 I 25 L 19 D 26 G 20 L 27 A 21 Q 28 H 22 E 29 K 23 E 43 D 24 V 44 P 25 V 45 S 26 N 46 R 27 R 47 P 28 A 48 A 29 G 49 H 30 K 50 Y 31 L 51 V 32 A 52 P 33 A 53 R 34 K 54 Y 35 F 55 L 36 R 56 R 37 A 57 E 38 S 58 Q 39 G 59 G 40 Q 60 Y 41 P 61 R 42 V 62 V 43 F 63 L 44 L 64 P 45 V 65 V 46 R 66 N 47 V 67 P 48 G 68 R 49 W 69 F 50 S 70 Q 51 A 71 G 52 D 72 E 53 Y 73 E 54 A 74 L 55 E 75 F 56 W 94 G 57 W 95 E 58 Q 96 E 59 H 97 A 60 P 98 V 61 A 99 A 62 A 100 S 63 L 101 L 64 G 102 L 65 A 103 D 66 T 104 L 67 D 105 K 68 S 106 E 69 D 107 P 70 I 108 V 71 E 109 D 72 I 110 I 73 I 111 L 74 K 112 D 75 R 113 V 76 Q 114 F 77 W 115 R 78 G 116 P 79 A 117 P 80 F 118 S 81 Y 119 A 82 G 120 L 83 T 121 M 84 D 122 D 85 L 123 H 86 E 124 L 87 L 125 P 88 Q 126 E 89 L 127 V 90 R 128 L 91 R 129 A 92 R 130 L 93 G 131 R 94 I 132 P 95 D 133 G 96 T 134 L 97 I 135 V 98 V 136 W 99 L 137 L 100 C 138 Q 101 G 139 S 102 I 140 G 103 S 141 I 104 T 142 R 105 N 143 H 106 I 144 P 107 G 145 E 108 V 146 F 109 E 147 E 110 S 148 K 111 T 149 A 112 A 150 L 113 R 151 K 114 N 152 E 115 N 177 A 116 S 178 G 117 I 179 I 118 N 180 P 119 H 181 V 120 I 182 V 121 Y 183 A 122 P 184 D 123 R 185 R 124 I 186 C 125 A 187 L 126 R 188 M 127 V 189 V 128 R 190 E 129 S 191 H 130 V 192 K 131 E 193 R 132 E 194 L 133 I 195 F 134 L 196 R 135 N 197 G 136 TER END ### ALIGNMENT: MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION) ### >P1;hs1dxea structureX:hs1dxea DVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPV VRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSN KNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPS GILAPVEADARRYLEWGATFVAVGSDLGVFRSATQKLADTFKK* >P1;QUERY YECD sequence ----------MRHDFVFSGVIMLELNAKTTAL--------VVIDLQEGILPFAGGPHTADE--------- --VVNRAGKLAAKFRASGQPVFLVRVGWSADYAEALKQPVDAPS------PAKVLPENWWQHPAALGATD SDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGISTNI---------------GVESTARNAWELGFNL VIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL----* ### ALIGNMENT: MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE ### SEQ: yecd PRF: hs1dxea SEQLEN: 199 PRFLEN: 253 PRFSTRNUM: 1 ZSCORE: 3.44 >P1;hs1dxea structureX:hs1dxea DVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPV VRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSN KNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPS GILAPVEADARRYLEWGATFVAVGSDLGVFRSATQKLADTFKK* >P1;QUERY YECD sequence ----------MRHDFVFSGVIMLELNAKTTAL--------VVIDLQEGILPFAGGPHTADE--------- --VVNRAGKLAAKFRASGQPVFLVRVGWSADYAEALKQPVDAPS------PAKVLPENWWQHPAALGATD SDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGISTNI---------------GVESTARNAWELGFNL VIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL----* ### CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS) ### ### IF NOT EQUIVELENT TO <> SECTION, THIS PART WILL BE DISCARDED. ### PFRMAT AL TARGET QUERY YECD AUTHOR 3359-3308-3659 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=3.44 REMARK CONFIDENCE: GUESS (50% confidence [ ZSCORE>=2.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: hs1dxea METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. MODEL 8 PARENT 1dxe_A M 1 L 14 R 2 A 15 H 3 A 16 D 4 K 17 F 5 Q 18 V 6 V 19 F 7 Q 20 S 8 I 21 G 9 G 22 V 10 C 23 I 11 W 24 M 12 S 25 L 13 A 26 E 14 L 27 L 15 S 28 N 16 N 29 A 17 P 30 K 18 I 31 T 19 S 32 T 20 T 33 A 21 E 34 L 22 V 35 V 23 L 44 V 24 V 45 I 25 L 46 D 26 D 47 L 27 G 48 Q 28 E 49 E 29 H 50 G 30 A 51 I 31 P 52 L 32 N 53 P 33 D 54 F 34 I 55 A 35 S 56 G 36 T 57 G 37 F 58 P 38 I 59 H 39 P 60 T 40 Q 61 A 41 L 62 D 42 M 63 E 43 A 64 V 44 V 76 V 45 P 77 N 46 T 78 R 47 N 79 A 48 E 80 G 49 P 81 K 50 V 82 L 51 I 83 A 52 I 84 A 53 K 85 K 54 R 86 F 55 L 87 R 56 L 88 A 57 D 89 S 58 I 90 G 59 G 91 Q 60 F 92 P 61 Y 93 V 62 N 94 F 63 F 95 L 64 L 96 V 65 I 97 R 66 P 98 V 67 F 99 G 68 V 100 W 69 E 101 S 70 T 102 A 71 K 103 D 72 E 104 Y 73 E 105 A 74 A 106 E 75 E 107 A 76 L 108 L 77 A 109 K 78 V 110 Q 79 A 111 P 80 S 112 V 81 T 113 D 82 R 114 A 83 Y 115 P 84 P 116 S 85 P 117 P 86 S 124 A 87 V 125 K 88 S 126 V 89 H 127 L 90 R 128 P 91 A 129 E 92 N 130 N 93 M 131 W 94 F 132 W 95 G 133 Q 96 T 134 H 97 V 135 P 98 A 136 A 99 D 137 A 100 Y 138 L 101 F 139 G 102 A 140 A 103 Q 141 T 104 S 142 D 105 N 143 S 106 K 144 D 107 N 145 I 108 I 146 E 109 T 147 I 110 I 148 I 111 L 149 K 112 V 150 R 113 Q 151 Q 114 I 152 W 115 E 153 G 116 S 154 A 117 Q 155 F 118 Q 156 Y 119 G 157 G 120 V 158 T 121 D 159 D 122 N 160 L 123 V 161 E 124 D 162 L 125 A 163 Q 126 I 164 L 127 A 165 R 128 A 166 R 129 T 167 R 130 E 168 G 131 G 169 I 132 V 170 D 133 D 171 T 134 G 172 I 135 I 173 V 136 F 174 L 137 V 175 C 138 G 176 G 139 P 177 I 140 S 178 S 141 D 179 T 142 L 180 N 143 A 181 I 144 A 182 G 145 A 198 V 146 I 199 E 147 Q 200 S 148 H 201 T 149 I 202 A 150 F 203 R 151 N 204 N 152 R 205 A 153 A 206 W 154 S 207 E 155 A 208 L 156 H 209 G 157 G 210 F 158 K 211 N 159 P 212 L 160 S 213 V 161 G 214 I 162 I 215 A 163 L 216 E 164 A 217 D 165 P 218 A 166 V 219 C 167 E 220 S 168 A 221 A 169 D 222 A 170 A 223 S 171 R 224 A 172 R 225 E 173 Y 226 Q 174 L 227 H 175 E 228 N 176 W 229 N 177 G 230 S 178 A 231 I 179 T 232 N 180 F 233 H 181 V 234 I 182 A 235 Y 183 V 236 P 184 G 237 R 185 S 238 I 186 D 239 A 187 L 240 R 188 G 241 V 189 V 242 R 190 F 243 S 191 R 244 V 192 S 245 E 193 A 246 E 194 T 247 I 195 Q 248 L 196 K 249 N 197 L 250 A 198 A 251 L 199 D 252 TER END ### ALIGNMENT: MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION) ### >P1;1a3wa structureX:1a3wa SRLERLTSLSDLRRTSIIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYHKSVIDNARKSEELYPG RPLAIALDTKGPEIRTGTTTNDVDYPIPPNHEMIFTTDDKYAKACDDKIMYVDYKNITKVISAGRIIYVD DGVLSFQVLEVVDTLKVKALNAGKICSHKGVNLPGTDVDLPALSEKDKEDLRFGVKNGVHMVFASFIRTA NDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEI--------PAPEVLAVQ KKLIAKSNLAGKPVICATQML-------------------------------------ESMTYNPRPTRA EVSDVGNAILD-GADCVMLSGETAKGNYPINAVTTMAETAVIAEQAIAYLPNYDDMRNCTPKPTSTTETV AASAVAAVFEQKAKAIIVLSTSGTTPRLVSKYRPNCPIILVTRCPRAARFSHLYRGVFPFVFEKEPVSDW TDDVEARINFGIEKAKEFGILKKGDTYVSIQGFKAGAGHSNTLQVSTV* >P1;QUERY YECD sequence ---------------------------------------------------------------------- ---------------------------------------------------------------------- ---------------------------------------------------------------------- ----------------------MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRA GKLAAKFRASGQPVFLVRVGWSADYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAF YGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIAR VRSVEEILNAL----------------------------------------------------------- ------------------------------------------------* ### ALIGNMENT: MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE ### SEQ: yecd PRF: 1a3wa SEQLEN: 199 PRFLEN: 492 PRFSTRNUM: 1 ZSCORE: 3.37 >P1;1a3wa structureX:1a3wa SRLERLTSLSDLRRTSIIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYHKSVIDNARKSEELYPG RPLAIALDTKGPEIRTGTTTNDVDYPIPPNHEMIFTTDDKYAKACDDKIMYVDYKNITKVISAGRIIYVD DGVLSFQVLEVVDTLKVKALNAGKICSHKGVNLPGTDVDLPALSEKDKEDLRFGVKNGVHMVFASFIRTA NDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEI--------PAPEVLAVQ KKLIAKSNLAGKPVICATQML-------------------------------------ESMTYNPRPTRA EVSDVGNAILD-GADCVMLSGETAKGNYPINAVTTMAETAVIAEQAIAYLPNYDDMRNCTPKPTSTTETV AASAVAAVFEQKAKAIIVLSTSGTTPRLVSKYRPNCPIILVTRCPRAARFSHLYRGVFPFVFEKEPVSDW TDDVEARINFGIEKAKEFGILKKGDTYVSIQGFKAGAGHSNTLQVSTV* >P1;QUERY YECD sequence ---------------------------------------------------------------------- ---------------------------------------------------------------------- ---------------------------------------------------------------------- ----------------------MRHDFVFSGVIMLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRA GKLAAKFRASGQPVFLVRVGWSADYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAF YGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIAR VRSVEEILNAL----------------------------------------------------------- ------------------------------------------------* ### CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS) ### ### IF NOT EQUIVELENT TO <> SECTION, THIS PART WILL BE DISCARDED. ### PFRMAT AL TARGET QUERY YECD AUTHOR 3359-3308-3659 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=3.37 REMARK CONFIDENCE: GUESS (50% confidence [ ZSCORE>=2.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: 1a3wa METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. MODEL 9 PARENT 1a3w_A M 1 I 241 R 2 E 242 H 3 N 243 D 4 Q 244 F 5 Q 245 V 6 G 246 F 7 V 247 S 8 N 248 G 9 N 249 V 10 F 250 I 11 D 251 M 12 E 252 L 13 I 253 E 14 L 254 L 15 K 255 N 16 V 256 A 17 T 257 K 18 D 258 T 19 G 259 T 20 V 260 A 21 M 261 L 22 V 262 V 23 A 263 V 24 R 264 I 25 G 265 D 26 D 266 L 27 L 267 Q 28 G 268 E 29 I 269 G 30 E 270 I 31 I 271 T 40 P 272 A 41 A 273 D 42 P 274 E 43 E 275 V 44 V 276 V 45 L 277 N 46 A 278 R 47 V 279 A 48 Q 280 G 49 K 281 K 50 K 282 L 51 L 283 A 52 I 284 A 53 A 285 K 54 K 286 F 55 S 287 R 56 N 288 A 57 L 289 S 58 A 290 G 59 G 291 Q 60 K 292 P 61 P 293 V 62 V 294 F 63 I 295 L 64 C 296 V 65 A 297 R 66 T 298 V 67 Q 299 G 68 M 300 W 69 L 301 D 107 E 302 I 108 S 303 E 109 M 304 I 110 T 305 I 111 Y 306 K 112 N 307 R 113 P 308 Q 114 R 309 W 115 P 310 G 116 T 311 A 117 R 312 F 118 A 313 Y 119 E 314 G 120 V 315 T 121 S 316 D 122 D 317 L 123 V 318 E 124 G 319 L 125 N 320 Q 126 A 321 L 127 I 322 R 128 L 323 R 129 D 324 G 131 G 325 I 132 A 326 D 133 D 327 T 134 C 328 I 135 V 329 V 136 M 330 L 137 L 331 C 138 S 332 G 139 G 333 I 140 E 334 S 141 T 335 T 142 A 336 N 143 K 337 I 144 G 338 G 145 N 339 V 146 Y 340 E 147 P 341 S 148 I 342 T 149 N 343 A 150 A 344 R 151 V 345 N 152 T 346 A 153 T 347 W 154 M 348 E 155 A 349 L 156 E 350 G 157 T 351 F 158 A 352 N 159 V 353 L 160 I 354 V 161 A 355 I 162 E 356 A 163 Q 357 E 164 A 358 D 165 I 359 A 166 A 360 C 167 Y 361 S 168 L 362 A 169 P 363 A 170 N 364 S 171 Y 365 A 172 D 366 E 173 D 367 Q 174 M 368 H 175 R 369 N 176 N 370 N 177 C 371 S 178 T 372 I 179 P 373 N 180 K 374 H 181 P 375 I 182 T 376 Y 183 S 377 P 184 T 378 R 185 T 379 I 186 E 380 A 187 T 381 R 188 V 382 V 189 A 383 R 190 A 384 S 191 S 385 V 192 A 386 E 193 V 387 E 194 A 388 I 195 A 389 L 196 V 390 N 197 F 391 A 198 E 392 L 199 Q 393 TER END ### ALIGNMENT: MASTER SEQUENCE vs MOST SIMILAR STRUCTURE IN THE PROFILE (FOR CAFASP EVALUATION) ### >P1;hs1p9oa structureX:hs1p9oa RWAEVMARFAARLGAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRAR SAFPYAHRFPPQTWLSALRPSGPLSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHL LQAAAQALNPLGPSAMFYLAAAVSDFYVPPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINR ARKALEIYQHQVVVANIFVLIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFI* >P1;QUERY YECD sequence --------------------------------------------------------MRHDFVFSGVIMLE LNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVG--WSADYAEALKQPVD APSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGIS----TNIGVES TARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL--------* ### ALIGNMENT: MASTER SEQUENCE vs ALL STRUCTURES IN THE PROFILE ### SEQ: yecd PRF: hs1p9oa SEQLEN: 199 PRFLEN: 269 PRFSTRNUM: 1 ZSCORE: 3.27 >P1;hs1p9oa structureX:hs1p9oa RWAEVMARFAARLGAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRAR SAFPYAHRFPPQTWLSALRPSGPLSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHL LQAAAQALNPLGPSAMFYLAAAVSDFYVPPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINR ARKALEIYQHQVVVANIFVLIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFI* >P1;QUERY YECD sequence --------------------------------------------------------MRHDFVFSGVIMLE LNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVG--WSADYAEALKQPVD APSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGIS----TNIGVES TARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL--------* ### CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS) ### ### IF NOT EQUIVELENT TO <> SECTION, THIS PART WILL BE DISCARDED. ### PFRMAT AL TARGET QUERY YECD AUTHOR 3359-3308-3659 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=3.27 REMARK CONFIDENCE: GUESS (50% confidence [ ZSCORE>=2.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: hs1p9oa METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. MODEL 10 PARENT 1p9o_A M 1 L 74 R 2 A 75 H 3 A 76 D 4 G 77 F 5 Y 78 V 6 G 79 F 7 V 80 S 8 L 81 G 9 F 82 V 10 L 83 I 11 Y 84 M 12 R 85 L 13 A 86 E 14 R 87 L 15 S 88 N 16 A 89 A 17 F 90 K 18 P 91 T 19 Y 92 T 20 A 93 A 21 H 94 L 22 R 95 V 23 F 96 V 24 P 97 I 25 P 98 D 26 Q 99 L 27 T 100 Q 28 W 101 E 29 L 102 G 30 S 103 I 31 A 104 L 32 L 105 P 33 R 106 F 34 P 107 A 35 S 108 G 36 G 109 G 37 P 110 P 38 L 112 H 39 S 113 T 40 G 114 A 41 L 115 D 42 L 116 E 43 S 117 V 44 L 118 V 45 E 119 N 46 A 120 R 47 E 121 A 48 E 122 G 49 N 123 K 50 A 124 L 51 L 125 A 52 P 126 A 53 G 127 K 54 F 128 F 55 A 129 R 56 E 130 A 57 A 131 S 58 L 132 G 59 R 133 Q 60 S 134 P 61 Y 135 V 62 Q 136 F 63 E 137 L 64 A 138 V 65 A 139 R 66 A 140 V 67 A 141 G 68 G 142 W 69 L 145 S 70 V 146 A 71 V 147 D 72 E 148 Y 73 F 149 A 74 T 150 E 75 T 151 A 76 L 152 L 77 A 153 K 78 D 154 Q 79 Y 155 P 80 L 156 V 81 H 157 D 82 L 158 A 83 L 159 P 84 Q 160 S 85 A 161 P 86 A 162 A 87 A 163 K 88 Q 164 V 89 A 165 L 90 L 166 P 91 N 167 E 92 P 168 N 93 L 169 W 94 G 170 W 95 P 171 Q 96 S 172 H 97 A 173 P 98 M 174 A 99 F 175 A 100 Y 176 L 101 L 177 G 102 A 178 A 103 A 179 T 104 A 180 D 105 V 181 S 106 S 182 D 107 D 183 I 108 F 184 E 109 Y 185 I 110 V 186 I 111 P 187 K 112 P 202 R 113 L 203 Q 114 Q 204 W 115 I 205 G 116 T 206 A 117 M 207 F 118 K 208 Y 119 M 209 G 120 V 210 T 121 P 211 D 122 K 212 L 123 L 213 E 124 L 214 L 125 S 215 Q 126 P 216 L 127 L 217 R 128 V 218 R 129 K 219 R 130 D 220 G 131 W 221 I 132 A 222 D 133 P 223 T 134 K 224 I 135 A 225 V 136 F 226 L 137 I 227 C 138 I 228 G 139 S 229 I 140 F 230 S 141 K 231 T 142 P 236 N 143 A 237 I 144 I 238 G 145 V 239 V 146 I 240 E 147 N 241 S 148 R 242 T 149 A 243 A 150 R 244 R 151 K 245 N 152 A 246 A 153 L 247 W 154 E 248 E 155 I 249 L 156 Y 250 G 157 Q 251 F 158 H 252 N 159 Q 253 L 160 V 254 V 161 V 255 I 162 V 256 A 163 A 257 E 164 N 258 D 165 I 259 A 166 F 266 C 167 V 267 S 168 L 268 A 169 I 269 A 170 V 270 S 171 T 271 A 172 K 272 E 173 D 273 Q 174 S 274 H 175 E 275 N 176 T 276 N 177 K 277 S 178 L 278 I 179 L 279 N 180 L 280 H 181 S 281 I 182 E 282 Y 183 E 283 P 184 E 284 R 185 I 285 I 186 E 286 A 187 K 287 R 188 G 288 V 189 V 289 R 190 E 290 S 191 I 291 V 192 E 292 E 193 E 293 E 194 K 294 I 195 I 295 L 196 V 296 N 197 D 297 A 198 N 298 L 199 L 299 TER END